Mercurial > repos > ebi-gxa > seurat_run_pca
comparison seurat_run_pca.xml @ 4:3fd59cdcb477 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
| author | ebi-gxa |
|---|---|
| date | Fri, 27 Nov 2020 13:49:23 +0000 |
| parents | e534a73143b1 |
| children | 9547ebb03f6f |
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| 3:a54f3400a885 | 4:3fd59cdcb477 |
|---|---|
| 44 <data name="output_sdev" format="csv" from_work_dir="output_sdev" label="${tool.name} on ${on_string}: Seurat Std dev"/> | 44 <data name="output_sdev" format="csv" from_work_dir="output_sdev" label="${tool.name} on ${on_string}: Seurat Std dev"/> |
| 45 </outputs> | 45 </outputs> |
| 46 | 46 |
| 47 <tests> | 47 <tests> |
| 48 <test> | 48 <test> |
| 49 <param name="input" ftype="rdata" value="out_scale.rds"/> | 49 <param name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds"/> |
| 50 <output name="rds_seurat_file" ftype="rdata" value="out_runpca.rds" compare="sim_size"/> | 50 <output name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds" compare="sim_size" delta="10000000"/> |
| 51 <output name="output_embed" value="pca_embeddings.csv" compare="sim_size" delta="10000000" /> | |
| 52 <output name="output_load" value="pca_loadings.csv" compare="sim_size" delta="10000000" /> | |
| 53 <output name="output_sdev" value="pca_stdev.txt" compare="sim_size" delta="10000000" /> | |
| 51 </test> | 54 </test> |
| 52 </tests> | 55 </tests> |
| 53 <help><![CDATA[ | 56 <help><![CDATA[ |
| 54 .. class:: infomark | 57 .. class:: infomark |
| 55 | 58 |