Mercurial > repos > ebi-gxa > seurat_run_pca

diff seurat_run_pca.xml @ 4:3fd59cdcb477 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:49:23 +0000
parents e534a73143b1
children 9547ebb03f6f
line wrap: on
line diff
--- a/seurat_run_pca.xml	Sat Jul 11 08:42:37 2020 -0400
+++ b/seurat_run_pca.xml	Fri Nov 27 13:49:23 2020 +0000
@@ -46,8 +46,11 @@
 
     <tests>
         <test>
-            <param name="input" ftype="rdata" value="out_scale.rds"/>
-            <output name="rds_seurat_file" ftype="rdata" value="out_runpca.rds" compare="sim_size"/>
+            <param name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds"/>
+            <output name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds" compare="sim_size" delta="10000000"/>
+            <output name="output_embed" value="pca_embeddings.csv" compare="sim_size" delta="10000000" />
+            <output name="output_load" value="pca_loadings.csv" compare="sim_size" delta="10000000" />
+            <output name="output_sdev" value="pca_stdev.txt" compare="sim_size" delta="10000000" />
         </test>
     </tests>
     <help><![CDATA[