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comparison onto-toolkit/tools/ontology/obo2owl.xml @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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1 <tool id="obo2owl" name="Convert OBO to OWL" version="1.22">
2 <description>Converts an OBO formatted ontology to OWL format</description>
3 <command interpreter="perl">/usr/bin/obo2owl.pl $input $url $oboinowlurl > $output</command>
4 <inputs>
5 <param format="text" name="input" type="data" label="Source file"/>
6 <param name="url" type="text" size="50" value="http://" label="URL" />
7 <param name="oboinowlurl" type="text" size="50" value="http://" label="OBOinOWL URL" />
8 </inputs>
9 <outputs>
10 <data format="text" name="output" />
11 </outputs>
12
13 <tests>
14 <test>
15 <param name="input" value="pre_cco_core.obo"/>
16 <output name="out_file" file="pre_cco_core.owl"/>
17 </test>
18 </tests>
19
20 <help>
21 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to OWL.
22
23 More information:
24
25 ONTO-PERL: An API supporting the development and analysis of bio-ontologies
26 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
27 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
28
29 </help>
30
31 </tool>
32