<tool id="obo2owl" name="Convert OBO to OWL" version="1.22">
  <description>Converts an OBO formatted ontology to OWL format</description>
  <command interpreter="perl">/usr/bin/obo2owl.pl $input $url $oboinowlurl > $output</command>
  <inputs>
    <param format="text" name="input" type="data" label="Source file"/>
    <param name="url" type="text" size="50" value="http://" label="URL" />
    <param name="oboinowlurl" type="text" size="50" value="http://" label="OBOinOWL URL" />
  </inputs>
  <outputs>
    <data format="text" name="output" />
  </outputs>

  <tests>
    <test>
      <param name="input" value="pre_cco_core.obo"/>
      <output name="out_file" file="pre_cco_core.owl"/>
    </test>
  </tests>

  <help>
This tool transforms an OBO formatted ontology (such as the Gene Ontology) to OWL.

More information:

  ONTO-PERL: An API supporting the development and analysis of bio-ontologies
  E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
  Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042

  </help>

</tool>