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annotate onto-toolkit/tools/ontology/obo2owl.xml @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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1 <tool id="obo2owl" name="Convert OBO to OWL" version="1.22">
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2 <description>Converts an OBO formatted ontology to OWL format</description>
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3 <command interpreter="perl">/usr/bin/obo2owl.pl $input $url $oboinowlurl > $output</command>
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4 <inputs>
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5 <param format="text" name="input" type="data" label="Source file"/>
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6 <param name="url" type="text" size="50" value="http://" label="URL" />
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7 <param name="oboinowlurl" type="text" size="50" value="http://" label="OBOinOWL URL" />
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8 </inputs>
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9 <outputs>
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10 <data format="text" name="output" />
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11 </outputs>
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12
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13 <tests>
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14 <test>
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15 <param name="input" value="pre_cco_core.obo"/>
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16 <output name="out_file" file="pre_cco_core.owl"/>
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17 </test>
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18 </tests>
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19
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20 <help>
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21 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to OWL.
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22
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23 More information:
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25 ONTO-PERL: An API supporting the development and analysis of bio-ontologies
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26 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
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27 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
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29 </help>
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31 </tool>
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