Mercurial > repos > erick-antezana > onto-toolkit
comparison onto-toolkit/tools/ontology/obo2tran.xml @ 0:4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
| author | erick-antezana |
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| date | Tue, 07 Jun 2011 17:51:45 -0400 |
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| -1:000000000000 | 0:4484575e4186 |
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| 1 <tool id="obo2tran" name="Convert OBO to RDF (tc)" version="1.22"> | |
| 2 <description>Converts an OBO formatted ontology to RDF/XML format with transitive closure</description> | |
| 3 <command interpreter="perl">/usr/bin/obo2tran.pl $input $url > $output</command> | |
| 4 <inputs> | |
| 5 <param format="text" name="input" type="data" label="Source file"/> | |
| 6 <param name="url" type="text" size="50" value="http://" label="URL" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="text" name="output" /> | |
| 10 </outputs> | |
| 11 | |
| 12 <tests> | |
| 13 <test> | |
| 14 <param name="input" value="pre_cco_core.obo"/> | |
| 15 <output name="out_file" file="pre_cco_core_tran.rdf"/> | |
| 16 </test> | |
| 17 </tests> | |
| 18 | |
| 19 <help> | |
| 20 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to an RDF/XML one that has (full) transitive closure. | |
| 21 | |
| 22 More information: | |
| 23 | |
| 24 ONTO-PERL: An API supporting the development and analysis of bio-ontologies | |
| 25 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov | |
| 26 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 | |
| 27 | |
| 28 </help> | |
| 29 | |
| 30 </tool> | |
| 31 |