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annotate onto-toolkit/tools/ontology/obo2tran.xml @ 0:4484575e4186

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Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author erick-antezana
date Tue, 07 Jun 2011 17:51:45 -0400
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4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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1 <tool id="obo2tran" name="Convert OBO to RDF (tc)" version="1.22">
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2 <description>Converts an OBO formatted ontology to RDF/XML format with transitive closure</description>
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3 <command interpreter="perl">/usr/bin/obo2tran.pl $input $url > $output</command>
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4 <inputs>
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5 <param format="text" name="input" type="data" label="Source file"/>
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6 <param name="url" type="text" size="50" value="http://" label="URL" />
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7 </inputs>
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8 <outputs>
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9 <data format="text" name="output" />
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10 </outputs>
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12 <tests>
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13 <test>
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14 <param name="input" value="pre_cco_core.obo"/>
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15 <output name="out_file" file="pre_cco_core_tran.rdf"/>
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16 </test>
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17 </tests>
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19 <help>
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20 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to an RDF/XML one that has (full) transitive closure.
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21
4484575e4186 Migrated tool version 0.1 from old tool shed archive to new tool shed repository
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22 More information:
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24 ONTO-PERL: An API supporting the development and analysis of bio-ontologies
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25 E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov
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26 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
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28 </help>
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30 </tool>
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