Mercurial > repos > erick-antezana > onto-toolkit
view onto-toolkit/tools/ontology/obo2tran.xml @ 0:4484575e4186
Migrated tool version 0.1 from old tool shed archive to new tool shed repository
author | erick-antezana |
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date | Tue, 07 Jun 2011 17:51:45 -0400 |
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<tool id="obo2tran" name="Convert OBO to RDF (tc)" version="1.22"> <description>Converts an OBO formatted ontology to RDF/XML format with transitive closure</description> <command interpreter="perl">/usr/bin/obo2tran.pl $input $url > $output</command> <inputs> <param format="text" name="input" type="data" label="Source file"/> <param name="url" type="text" size="50" value="http://" label="URL" /> </inputs> <outputs> <data format="text" name="output" /> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <output name="out_file" file="pre_cco_core_tran.rdf"/> </test> </tests> <help> This tool transforms an OBO formatted ontology (such as the Gene Ontology) to an RDF/XML one that has (full) transitive closure. More information: ONTO-PERL: An API supporting the development and analysis of bio-ontologies E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 </help> </tool>