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1
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1 {
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2 "id": "Human microbiomes",
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3 "comment": "This is an optional comment",
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4 "format": "Biological Observation Matrix 0.9.1-dev",
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5 "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html",
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6 "type": "OTU table",
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7 "generated_by": "QIIME revision 1.4.0-dev",
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8 "date": "2011-12-19T19:00:00",
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9 "rows":[
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10 {"id":"0", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}},
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11 {"id":"1", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}},
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12 {"id":"2", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__mazei"]}},
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13 {"id":"3", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__"]}},
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14 {"id":"4", "metadata":{"taxonomy":[]}}
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15 ],
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16 "columns":[
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17 {"id":"Sample1", "metadata":{
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18 "BarcodeSequence":"CGCTTATCGAGA",
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19 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
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20 "BODY_SITE":"gut",
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21 "Description":"human gut"}},
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22 {"id":"Sample2", "metadata":{
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23 "BarcodeSequence":"CATACCAGTAGC",
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24 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
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25 "BODY_SITE":"gut",
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26 "Description":"human gut"}},
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27 {"id":"Sample3", "metadata":{
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28 "BarcodeSequence":"CTCTCTACCTGT",
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29 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
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30 "BODY_SITE":"gut",
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31 "Description":"human skin"}}
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32 ],
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33 "matrix_type": "sparse",
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34 "matrix_element_type": "int",
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35 "shape": [5, 3],
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36 "data":[[0,2,4],
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37 [1,0,5],
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38 [1,1,3],
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39 [2,2,3],
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40 [3,0,2],
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41 [3,1,2],
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42 [3,2,2],
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43 [4,1,1],
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44 [4,2,1]
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45 ]
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46 }
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