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comparison test-data/in.biom @ 1:658ad8b92341 draft default tip

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author fangly
date Mon, 29 Jul 2013 07:01:57 -0400
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0:7a7ecf9b9df7 1:658ad8b92341
1 {
2 "id": "Human microbiomes",
3 "comment": "This is an optional comment",
4 "format": "Biological Observation Matrix 0.9.1-dev",
5 "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html",
6 "type": "OTU table",
7 "generated_by": "QIIME revision 1.4.0-dev",
8 "date": "2011-12-19T19:00:00",
9 "rows":[
10 {"id":"0", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}},
11 {"id":"1", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}},
12 {"id":"2", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__mazei"]}},
13 {"id":"3", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__"]}},
14 {"id":"4", "metadata":{"taxonomy":[]}}
15 ],
16 "columns":[
17 {"id":"Sample1", "metadata":{
18 "BarcodeSequence":"CGCTTATCGAGA",
19 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
20 "BODY_SITE":"gut",
21 "Description":"human gut"}},
22 {"id":"Sample2", "metadata":{
23 "BarcodeSequence":"CATACCAGTAGC",
24 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
25 "BODY_SITE":"gut",
26 "Description":"human gut"}},
27 {"id":"Sample3", "metadata":{
28 "BarcodeSequence":"CTCTCTACCTGT",
29 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
30 "BODY_SITE":"gut",
31 "Description":"human skin"}}
32 ],
33 "matrix_type": "sparse",
34 "matrix_element_type": "int",
35 "shape": [5, 3],
36 "data":[[0,2,4],
37 [1,0,5],
38 [1,1,3],
39 [2,2,3],
40 [3,0,2],
41 [3,1,2],
42 [3,2,2],
43 [4,1,1],
44 [4,2,1]
45 ]
46 }