Mercurial > repos > fgiacomoni > downloader_bank_hmdb
comparison conf.cfg @ 0:7c9269bded0e draft
Init repository for [downloader_bank_hmdb]
| author | fgiacomoni |
|---|---|
| date | Tue, 14 Jan 2020 05:21:23 -0500 |
| parents | |
| children | be504ccbc41c |
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| -1:000000000000 | 0:7c9269bded0e |
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| 1 ## Conf file for downloader_bank_hmdb.pl script | |
| 2 # | |
| 3 ## Version | |
| 4 VERSION=1.1 | |
| 5 ##v1.0 : Init | |
| 6 ##V1.1 : calculating and adding [M+H]+ and [M-H]- mono isotopic mass in banks | |
| 7 # | |
| 8 ## ARGVT | |
| 9 PROTON_MASS=1.007825 | |
| 10 ELECTRON_MASS=0.0005486 | |
| 11 #CHARGE=1 | |
| 12 | |
| 13 #LOCAL BANKS VERSIONNING | |
| 14 LOCALBANK_PATH=banks | |
| 15 | |
| 16 #HMDB archive url | |
| 17 HMDB_URL= | |
| 18 ## Serum | |
| 19 SERUM_URL=http://www.hmdb.ca/system/downloads/current/serum_metabolites.zip | |
| 20 SERUM_FILE_NAME=serum_metabolites.xml | |
| 21 SERUM_HTTP_FORMAT=ZIP | |
| 22 SERUM_DB_FORMAT=XML | |
| 23 ## Urine | |
| 24 URINE_URL=http://www.hmdb.ca/system/downloads/current/urine_metabolites.zip | |
| 25 URINE_FILE_NAME=urine_metabolites.xml | |
| 26 URINE_HTTP_FORMAT=ZIP | |
| 27 URINE_DB_FORMAT=XML | |
| 28 ## Other matrices: | |
| 29 ## CSF | |
| 30 CSF_URL=http://www.hmdb.ca/system/downloads/current/csf_metabolites.zip | |
| 31 CSF_FILE_NAME=csf_metabolites.xml | |
| 32 CSF_HTTP_FORMAT=ZIP | |
| 33 CSF_DB_FORMAT=XML | |
| 34 ##FECES | |
| 35 FECES_URL=http://www.fecalmetabolome.ca/system/downloads/current/feces_metabolites.zip | |
| 36 FECES_FILE_NAME=feces_metabolites.xml | |
| 37 FECES_HTTP_FORMAT=ZIP | |
| 38 FECES_DB_FORMAT=XML | |
| 39 ##SALIVA | |
| 40 SALIVA_URL=http://www.salivametabolome.ca/system/downloads/current/saliva_metabolites.zip | |
| 41 SALIVA_FILE_NAME=saliva_metabolites.xml | |
| 42 SALIVA_HTTP_FORMAT=ZIP | |
| 43 SALIVA_DB_FORMAT=XML | |
| 44 ##RUMEN | |
| 45 RUMEN_URL=http://www.rumendb.ca/public/downloads/current/metabocards.gz | |
| 46 RUMEN_FILE_NAME=metabocards | |
| 47 RUMEN_HTTP_FORMAT=GZ | |
| 48 RUMEN_DB_FORMAT=CARD | |
| 49 ##COW | |
| 50 COW_URL=http://www.cowmetdb.ca/public/downloads/current/metabocards.gz | |
| 51 COW_FILE_NAME=metabocards | |
| 52 COW_HTTP_FORMAT=GZ | |
| 53 COW_DB_FORMAT=CARD | |
| 54 ##MILK | |
| 55 MILK_URL=http://www.mcdb.ca/system/downloads/current/milk_metabolites.zip | |
| 56 MILK_FILE_NAME=milk_metabolites.xml | |
| 57 MILK_HTTP_FORMAT=ZIP | |
| 58 MILK_DB_FORMAT=XML |