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comparison qiime2/qiime_phylogeny_midpoint-root.xml @ 0:370e0b6e9826 draft

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author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
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-1:000000000000 0:370e0b6e9826
1 <?xml version="1.0" ?>
2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.4">
3 <description> - Midpoint root an unrooted phylogenetic tree.</description>
4 <requirements>
5 <requirement type="package" version="2019.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime phylogeny midpoint-root
9
10 --i-tree=$itree
11
12 --o-rooted-tree=orootedtree
13 ;
14 cp orootedtree.qza $orootedtree
15 ]]></command>
16 <inputs>
17 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/>
18 </inputs>
19 <outputs>
20 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/>
21 </outputs>
22 <help><![CDATA[
23 Midpoint root an unrooted phylogenetic tree.
24 ############################################
25
26 Midpoint root an unrooted phylogenetic tree.
27
28 Parameters
29 ----------
30 tree : Phylogeny[Unrooted]
31 The phylogenetic tree to be rooted.
32
33 Returns
34 -------
35 rooted_tree : Phylogeny[Rooted]
36 The rooted phylogenetic tree.
37 ]]></help>
38 <macros>
39 <import>qiime_citation.xml</import>
40 </macros>
41 <expand macro="qiime_citation"/>
42 </tool>