diff qiime2/qiime_phylogeny_midpoint-root.xml @ 0:370e0b6e9826 draft

Uploaded
author florianbegusch
date Wed, 17 Jul 2019 03:05:17 -0400
parents
children f190567fe3f6
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_phylogeny_midpoint-root.xml	Wed Jul 17 03:05:17 2019 -0400
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+<?xml version="1.0" ?>
+<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.4">
+	<description> - Midpoint root an unrooted phylogenetic tree.</description>
+	<requirements>
+		<requirement type="package" version="2019.4">qiime2</requirement>
+	</requirements>
+	<command><![CDATA[
+qiime phylogeny midpoint-root
+
+--i-tree=$itree
+
+--o-rooted-tree=orootedtree
+;
+cp orootedtree.qza $orootedtree
+	]]></command>
+	<inputs>
+		<param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted.          [required]" name="itree" optional="False" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/>
+	</outputs>
+	<help><![CDATA[
+Midpoint root an unrooted phylogenetic tree.
+############################################
+
+Midpoint root an unrooted phylogenetic tree.
+
+Parameters
+----------
+tree : Phylogeny[Unrooted]
+    The phylogenetic tree to be rooted.
+
+Returns
+-------
+rooted_tree : Phylogeny[Rooted]
+    The rooted phylogenetic tree.
+	]]></help>
+<macros>
+    <import>qiime_citation.xml</import>
+</macros>
+<expand macro="qiime_citation"/>
+</tool>