Mercurial > repos > florianbegusch > qiime2_suite
diff qiime2/qiime_phylogeny_midpoint-root.xml @ 0:370e0b6e9826 draft
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author | florianbegusch |
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date | Wed, 17 Jul 2019 03:05:17 -0400 |
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children | f190567fe3f6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_phylogeny_midpoint-root.xml Wed Jul 17 03:05:17 2019 -0400 @@ -0,0 +1,42 @@ +<?xml version="1.0" ?> +<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2019.4"> + <description> - Midpoint root an unrooted phylogenetic tree.</description> + <requirements> + <requirement type="package" version="2019.4">qiime2</requirement> + </requirements> + <command><![CDATA[ +qiime phylogeny midpoint-root + +--i-tree=$itree + +--o-rooted-tree=orootedtree +; +cp orootedtree.qza $orootedtree + ]]></command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree"/> + </outputs> + <help><![CDATA[ +Midpoint root an unrooted phylogenetic tree. +############################################ + +Midpoint root an unrooted phylogenetic tree. + +Parameters +---------- +tree : Phylogeny[Unrooted] + The phylogenetic tree to be rooted. + +Returns +------- +rooted_tree : Phylogeny[Rooted] + The rooted phylogenetic tree. + ]]></help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation"/> +</tool>