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1 <?xml version="1.0" ?>
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2 <tool id="qiime_diversity_pcoa" name="qiime diversity pcoa" version="2018.4">
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3 <description> - Principal Coordinate Analysis</description>
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4 <requirements>
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5 <requirement type="package" version="2018.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime diversity pcoa --i-distance-matrix=$idistancematrix
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9
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10 #if str($cmdconfig) != 'None':
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11 --cmd-config=$cmdconfig
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12 #end if
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13
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14 --o-pcoa=opcoa;
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15
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16 cp opcoa.qza $opcoa;
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17 ]]></command>
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18 <inputs>
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19 <param format="qza,no_unzip.zip" label="--i-distance-matrix: DistanceMatrix The distance matrix on which PCoA should be computed. [required]" name="idistancematrix" optional="False" type="data"/>
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20 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
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21 </inputs>
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22 <outputs>
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23 <data format="qza" label="${tool.name} on ${on_string}: pcoa.qza" name="opcoa"/>
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24 </outputs>
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25 <help><![CDATA[
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26 Principal Coordinate Analysis
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27 ------------------------------
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28
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29 Apply principal coordinate analysis.
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30
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31 Parameters
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32 ----------
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33 distance_matrix : DistanceMatrix
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34 The distance matrix on which PCoA should be computed.
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35
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36 Returns
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37 -------
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38 pcoa : PCoAResults
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39 The resulting PCoA matrix.
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40 ]]>
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41 </help>
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42 <macros>
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43 <import>qiime_citation.xml</import>
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44 </macros>
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45 <expand macro="qiime_citation" />
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46 </tool>
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