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1 <?xml version="1.0" ?>
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2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2018.4">
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3 <description> - Midpoint root an unrooted phylogenetic tree.</description>
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4 <requirements>
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5 <requirement type="package" version="2018.4">qiime2</requirement>
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6 </requirements>
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7 <command>
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8 <![CDATA[
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9 qiime phylogeny midpoint-root --i-tree=$itree
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10
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11 #if str($cmdconfig) != 'None':
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12 --cmd-config=$cmdconfig
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13 #end if
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14 --o-rooted-tree=orootedtree;
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15
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16 cp orootedtree.qza $orootedtree;
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17 ]]>
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18 </command>
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19 <inputs>
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20 <param format="qza,no_unzip.zip" label="--i-tree: Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/>
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21 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
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22 </inputs>
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23 <outputs>
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24 <data format="qza" label="${tool.name} on ${on_string}: rooted-tree.qza" name="orootedtree"/>
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25 </outputs>
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26 <help>
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27 <![CDATA[
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28 Midpoint root an unrooted phylogenetic tree.
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29 ---------------------------------------------
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30
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31 Midpoint root an unrooted phylogenetic tree.
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32
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33 Parameters
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34 ----------
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35 tree : Phylogeny[Unrooted]
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36 The phylogenetic tree to be rooted.
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37
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38 Returns
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39 -------
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40 rooted_tree : Phylogeny[Rooted]
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41 The rooted phylogenetic tree.
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42 ]]>
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43 </help>
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44 <macros>
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45 <import>qiime_citation.xml</import>
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46 </macros>
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47 <expand macro="qiime_citation" />
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48 </tool>
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