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comparison qiime2/qiime_deblur_visualize-stats.xml @ 0:51b9b6b57732 draft

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author florianbegusch
date Thu, 24 May 2018 05:21:07 -0400
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1 <?xml version="1.0" ?>
2 <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2018.4">
3 <description> - Visualize Deblur stats per sample.</description>
4 <requirements>
5 <requirement type="package" version="2018.4">qiime2</requirement>
6 </requirements>
7 <command><![CDATA[
8 qiime deblur visualize-stats --i-deblur-stats=$ideblurstats
9
10 #if str($cmdconfig) != 'None':
11 --cmd-config=$cmdconfig
12 #end if
13
14 --o-visualization=ovisualization;
15
16 qiime tools export ovisualization.qzv --output-dir out && mkdir -p '$ovisualization.files_path'
17 && cp -r out/* '$ovisualization.files_path'
18 && mv '$ovisualization.files_path/index.html' '$ovisualization';
19 ]]></command>
20 <inputs>
21 <param format="qza,no_unzip.zip" label="--i-deblur-stats: DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/>
22 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
23 </inputs>
24 <outputs>
25 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
26 </outputs>
27 <help><![CDATA[
28 Visualize Deblur stats per sample.
29 ----------------------------------
30
31 Display Deblur statistics per sample
32
33 Parameters
34 ----------
35 deblur_stats : DeblurStats
36 Summary statistics of the Deblur process.
37
38 Returns
39 -------
40 visualization : Visualization
41 \
42 ]]>
43 </help>
44 <macros>
45 <import>qiime_citation.xml</import>
46 </macros>
47 <expand macro="qiime_citation" />
48 </tool>