Mercurial > repos > florianbegusch > qiime2_wrappers
view qiime2/qiime_deblur_visualize-stats.xml @ 0:51b9b6b57732 draft
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author | florianbegusch |
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date | Thu, 24 May 2018 05:21:07 -0400 |
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<?xml version="1.0" ?> <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2018.4"> <description> - Visualize Deblur stats per sample.</description> <requirements> <requirement type="package" version="2018.4">qiime2</requirement> </requirements> <command><![CDATA[ qiime deblur visualize-stats --i-deblur-stats=$ideblurstats #if str($cmdconfig) != 'None': --cmd-config=$cmdconfig #end if --o-visualization=ovisualization; qiime tools export ovisualization.qzv --output-dir out && mkdir -p '$ovisualization.files_path' && cp -r out/* '$ovisualization.files_path' && mv '$ovisualization.files_path/index.html' '$ovisualization'; ]]></command> <inputs> <param format="qza,no_unzip.zip" label="--i-deblur-stats: DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/> <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> </inputs> <outputs> <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> </outputs> <help><![CDATA[ Visualize Deblur stats per sample. ---------------------------------- Display Deblur statistics per sample Parameters ---------- deblur_stats : DeblurStats Summary statistics of the Deblur process. Returns ------- visualization : Visualization \ ]]> </help> <macros> <import>qiime_citation.xml</import> </macros> <expand macro="qiime_citation" /> </tool>