view qiime2/qiime_deblur_visualize-stats.xml @ 0:51b9b6b57732 draft

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author florianbegusch
date Thu, 24 May 2018 05:21:07 -0400
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<?xml version="1.0" ?>
<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2018.4">
	<description> - Visualize Deblur stats per sample.</description>
	<requirements>
		<requirement type="package" version="2018.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
  qiime deblur visualize-stats --i-deblur-stats=$ideblurstats
  
  #if str($cmdconfig) != 'None':
   --cmd-config=$cmdconfig
  #end if
  
   --o-visualization=ovisualization;
  
  qiime tools export ovisualization.qzv --output-dir out   && mkdir -p '$ovisualization.files_path'
  && cp -r out/* '$ovisualization.files_path'
  && mv '$ovisualization.files_path/index.html' '$ovisualization';
  ]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-deblur-stats: DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/>
		<param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
	</inputs>
	<outputs>
		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
	</outputs>
	<help><![CDATA[
Visualize Deblur stats per sample.
----------------------------------

Display Deblur statistics per sample

Parameters
----------
deblur_stats : DeblurStats
    Summary statistics of the Deblur process.

Returns
-------
visualization : Visualization
		\
    ]]>
	</help>
<macros>
	<import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation" />
</tool>