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1 <?xml version="1.0" ?>
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2 <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats" version="2018.4">
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3 <description> - Visualize Deblur stats per sample.</description>
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4 <requirements>
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5 <requirement type="package" version="2018.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime deblur visualize-stats --i-deblur-stats=$ideblurstats
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9
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10 #if str($cmdconfig) != 'None':
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11 --cmd-config=$cmdconfig
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12 #end if
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13
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14 --o-visualization=ovisualization;
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15
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16 qiime tools export ovisualization.qzv --output-dir out && mkdir -p '$ovisualization.files_path'
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17 && cp -r out/* '$ovisualization.files_path'
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18 && mv '$ovisualization.files_path/index.html' '$ovisualization';
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19 ]]></command>
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20 <inputs>
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21 <param format="qza,no_unzip.zip" label="--i-deblur-stats: DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data"/>
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22 <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/>
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23 </inputs>
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24 <outputs>
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25 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
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26 </outputs>
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27 <help><![CDATA[
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28 Visualize Deblur stats per sample.
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29 ----------------------------------
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30
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31 Display Deblur statistics per sample
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32
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33 Parameters
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34 ----------
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35 deblur_stats : DeblurStats
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36 Summary statistics of the Deblur process.
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37
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38 Returns
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39 -------
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40 visualization : Visualization
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41 \
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42 ]]>
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43 </help>
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44 <macros>
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45 <import>qiime_citation.xml</import>
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46 </macros>
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47 <expand macro="qiime_citation" />
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48 </tool>
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