Mercurial > repos > florianbegusch > qiime2_wrappers
diff qiime2/qiime_phylogeny_midpoint-root.xml @ 0:51b9b6b57732 draft
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author | florianbegusch |
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date | Thu, 24 May 2018 05:21:07 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2/qiime_phylogeny_midpoint-root.xml Thu May 24 05:21:07 2018 -0400 @@ -0,0 +1,48 @@ +<?xml version="1.0" ?> +<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root" version="2018.4"> + <description> - Midpoint root an unrooted phylogenetic tree.</description> + <requirements> + <requirement type="package" version="2018.4">qiime2</requirement> + </requirements> + <command> + <![CDATA[ + qiime phylogeny midpoint-root --i-tree=$itree + + #if str($cmdconfig) != 'None': + --cmd-config=$cmdconfig + #end if + --o-rooted-tree=orootedtree; + + cp orootedtree.qza $orootedtree; + ]]> + </command> + <inputs> + <param format="qza,no_unzip.zip" label="--i-tree: Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data"/> + <param label="--cmd-config: Use config file for command options" name="cmdconfig" optional="True" type="data"/> + </inputs> + <outputs> + <data format="qza" label="${tool.name} on ${on_string}: rooted-tree.qza" name="orootedtree"/> + </outputs> + <help> + <![CDATA[ +Midpoint root an unrooted phylogenetic tree. +--------------------------------------------- + +Midpoint root an unrooted phylogenetic tree. + +Parameters +---------- +tree : Phylogeny[Unrooted] + The phylogenetic tree to be rooted. + +Returns +------- +rooted_tree : Phylogeny[Rooted] + The rooted phylogenetic tree. + ]]> + </help> +<macros> + <import>qiime_citation.xml</import> +</macros> +<expand macro="qiime_citation" /> +</tool>