Mercurial > repos > fubar > jbrowse2
view configbedscore.sample @ 108:5d1259b88c27 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
author | fubar |
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date | Sat, 29 Jun 2024 06:10:22 +0000 |
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{ "configuration": { "rpc": { "defaultDriver": "WebWorkerRpcDriver", "drivers": { "MainThreadRpcDriver": {}, "WebWorkerRpcDriver": {} } }, "logoPath": { "locationType": "UriLocation", "uri": "" } }, "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ], "assemblies": [ { "name": "Merlin", "sequence": { "type": "ReferenceSequenceTrack", "trackId": "Merlin-ReferenceSequenceTrack", "adapter": { "type": "BgzipFastaAdapter", "fastaLocation": { "locationType": "UriLocation", "uri": "Merlin.fa.gz" }, "faiLocation": { "locationType": "UriLocation", "uri": "Merlin.fa.gz.fai" }, "metadataLocation": { "locationType": "UriLocation", "uri": "/path/to/fa.metadata.yaml" }, "gziLocation": { "locationType": "UriLocation", "uri": "Merlin.fa.gz.gzi" } }, "displays": [ { "type": "LinearReferenceSequenceDisplay", "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay" }, { "type": "LinearGCContentDisplay", "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay" } ] } } ], "tracks": [ { "type": "FeatureTrack", "trackId": "test-6.bed_2.bed", "name": "test-6.bed_2.bed", "assemblyNames": [ "Merlin" ], "adapter": { "type": "BedTabixAdapter", "bedGzLocation": { "locationType": "UriLocation", "uri": "test-6.bed_2.bed.gz" }, "index": { "location": { "locationType": "UriLocation", "uri": "test-6.bed_2.bed.gz.tbi" } }, "columnNames": [ "chr", "start", "end", "name", "score" ], "scoreColumn": "score" }, "displays": [ { "type": "LinearBasicDisplay", "displayId": "test-6.bed_2.bed-LinearBasicDisplay", "renderer": { "type": "SvgFeatureRenderer", "color1": "jexl:customColor(feature)" } }, { "type": "LinearArcDisplay", "displayId": "test-6.bed_2.bed-LinearArcDisplay" } ] } ], "internetAccounts": [], "aggregateTextSearchAdapters": [], "connections": [], "defaultSession": { "drawerPosition": "right", "drawerWidth": 384, "widgets": { "GridBookmark": { "id": "GridBookmark", "type": "GridBookmarkWidget" }, "hierarchicalTrackSelector": { "id": "hierarchicalTrackSelector", "type": "HierarchicalTrackSelectorWidget", "initialized": true, "collapsed": {}, "view": "hzDuu9vlddMGFqOsaKwGq", "faceted": { "filterText": "", "showSparse": false, "showFilters": true, "showOptions": false, "panelWidth": 400 } } }, "activeWidgets": { "hierarchicalTrackSelector": "hierarchicalTrackSelector" }, "minimized": false, "id": "E6V-suQtYj1PSAnmq6-jz", "name": "New session 6/29/2024, 2:40:30 PM", "margin": 0, "views": [ { "id": "hzDuu9vlddMGFqOsaKwGq", "minimized": false, "type": "LinearGenomeView", "offsetPx": 0, "bpPerPx": 88.97425334706489, "displayedRegions": [ { "refName": "Merlin", "start": 0, "end": 172788, "reversed": false, "assemblyName": "Merlin" } ], "tracks": [ { "id": "sZaD_oFrn0S3MqLdbNEZI", "type": "FeatureTrack", "configuration": "test-6.bed_2.bed", "minimized": false, "displays": [ { "id": "JmJklY1ylJY0_SB-IDkNm", "type": "LinearBasicDisplay", "configuration": "test-6.bed_2.bed-LinearBasicDisplay" } ] } ], "hideHeader": false, "hideHeaderOverview": false, "hideNoTracksActive": false, "trackSelectorType": "hierarchical", "showCenterLine": false, "showCytobandsSetting": true, "trackLabels": "", "showGridlines": true, "showBookmarkHighlights": true, "showBookmarkLabels": true } ], "sessionTracks": [], "sessionAssemblies": [], "temporaryAssemblies": [], "connectionInstances": [], "sessionConnections": [], "focusedViewId": "hzDuu9vlddMGFqOsaKwGq", "sessionPlugins": [] } }