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comparison seqtk_telo/seqtk_telo.xml @ 1:0183cad9d13b draft

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author fubar
date Thu, 22 Feb 2024 10:48:01 +0000
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0:2beaae16651e 1:0183cad9d13b
1 <tool name="seqtk_telo" id="seqtk_telo" version="1.4" profile="22.05">
2 <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
3 <!--Created by toolfactory@galaxy.org at 09/12/2023 14:04:09 using the Galaxy Tool Factory.-->
4 <description></description>
5 <requirements>
6 <requirement version="1.4" type="package">seqtk</requirement>
7 </requirements>
8 <version_command><![CDATA[echo "1.4"]]></version_command>
9 <command><![CDATA[bash $runme]]></command>
10 <configfiles>
11 <configfile name="runme"><![CDATA[seqtk telo $infa > $out_bed ]]></configfile>
12 </configfiles>
13 <inputs>
14 <param name="infa" type="data" optional="false" label="Fasta input for telomere finding" help="" format="fasta" multiple="false"/>
15 </inputs>
16 <outputs>
17 <data name="out_bed" format="bed" label="seqtk_telo on $infa.element_identifier" hidden="false"/>
18 </outputs>
19 <tests>
20 <test>
21 <output name="out_bed" value="out_bed_sample" compare="diff" lines_diff="0"/>
22 <param name="infa" value="infa_sample"/>
23 </test>
24 </tests>
25 <help><![CDATA[
26 **What it Does**
27 ]]></help>
28 <citations>
29 <citation type="doi">10.1093/bioinformatics/bts573</citation>
30 </citations>
31 </tool>
32