|
1
|
1 <tool name="seqtk_telo" id="seqtk_telo" version="1.4" profile="22.05">
|
|
|
2 <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
|
|
|
3 <!--Created by toolfactory@galaxy.org at 09/12/2023 14:04:09 using the Galaxy Tool Factory.-->
|
|
|
4 <description></description>
|
|
|
5 <requirements>
|
|
|
6 <requirement version="1.4" type="package">seqtk</requirement>
|
|
|
7 </requirements>
|
|
|
8 <version_command><![CDATA[echo "1.4"]]></version_command>
|
|
|
9 <command><![CDATA[bash $runme]]></command>
|
|
|
10 <configfiles>
|
|
|
11 <configfile name="runme"><![CDATA[seqtk telo $infa > $out_bed ]]></configfile>
|
|
|
12 </configfiles>
|
|
|
13 <inputs>
|
|
|
14 <param name="infa" type="data" optional="false" label="Fasta input for telomere finding" help="" format="fasta" multiple="false"/>
|
|
|
15 </inputs>
|
|
|
16 <outputs>
|
|
|
17 <data name="out_bed" format="bed" label="seqtk_telo on $infa.element_identifier" hidden="false"/>
|
|
|
18 </outputs>
|
|
|
19 <tests>
|
|
|
20 <test>
|
|
|
21 <output name="out_bed" value="out_bed_sample" compare="diff" lines_diff="0"/>
|
|
|
22 <param name="infa" value="infa_sample"/>
|
|
|
23 </test>
|
|
|
24 </tests>
|
|
|
25 <help><![CDATA[
|
|
|
26 **What it Does**
|
|
|
27 ]]></help>
|
|
|
28 <citations>
|
|
|
29 <citation type="doi">10.1093/bioinformatics/bts573</citation>
|
|
|
30 </citations>
|
|
|
31 </tool>
|
|
|
32
|
