view seqtk_telo/seqtk_telo.xml @ 1:0183cad9d13b draft

planemo upload
author fubar
date Thu, 22 Feb 2024 10:48:01 +0000
parents
children
line wrap: on
line source

<tool name="seqtk_telo" id="seqtk_telo" version="1.4" profile="22.05">
  <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
  <!--Created by toolfactory@galaxy.org at 09/12/2023 14:04:09 using the Galaxy Tool Factory.-->
  <description></description>
  <requirements>
    <requirement version="1.4" type="package">seqtk</requirement>
  </requirements>
  <version_command><![CDATA[echo "1.4"]]></version_command>
  <command><![CDATA[bash $runme]]></command>
  <configfiles>
    <configfile name="runme"><![CDATA[seqtk telo $infa > $out_bed ]]></configfile>
  </configfiles>
  <inputs>
    <param name="infa" type="data" optional="false" label="Fasta input for telomere finding" help="" format="fasta" multiple="false"/>
  </inputs>
  <outputs>
    <data name="out_bed" format="bed" label="seqtk_telo on $infa.element_identifier" hidden="false"/>
  </outputs>
  <tests>
    <test>
      <output name="out_bed" value="out_bed_sample" compare="diff" lines_diff="0"/>
      <param name="infa" value="infa_sample"/>
    </test>
  </tests>
  <help><![CDATA[
 **What it Does**
  ]]></help>
  <citations>
    <citation type="doi">10.1093/bioinformatics/bts573</citation>
  </citations>
</tool>