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comparison seqrequester/build/obj/lib/libseqrequester.a/utility/src/align/align-ssw.P @ 1:1085e094cf5f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty
author fubar
date Sat, 13 Jul 2024 12:39:06 +0000
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0:dd71d3167476 1:1085e094cf5f
1 /home/ross/rossgit/microsatbed/seqrequester/build/obj/lib/libseqrequester.a/utility/src/align/align-ssw.o: \
2 utility/src/align/align-ssw.C /usr/include/stdc-predef.h \
3 /usr/lib/gcc/x86_64-linux-gnu/13/include/emmintrin.h \
4 /usr/lib/gcc/x86_64-linux-gnu/13/include/xmmintrin.h \
5 /usr/lib/gcc/x86_64-linux-gnu/13/include/mmintrin.h \
6 /usr/lib/gcc/x86_64-linux-gnu/13/include/mm_malloc.h \
7 /usr/include/c++/13/stdlib.h /usr/include/c++/13/cstdlib \
8 /usr/include/x86_64-linux-gnu/c++/13/bits/c++config.h \
9 /usr/include/x86_64-linux-gnu/c++/13/bits/os_defines.h \
10 /usr/include/features.h /usr/include/features-time64.h \
11 /usr/include/x86_64-linux-gnu/bits/wordsize.h \
12 /usr/include/x86_64-linux-gnu/bits/timesize.h \
13 /usr/include/x86_64-linux-gnu/sys/cdefs.h \
14 /usr/include/x86_64-linux-gnu/bits/long-double.h \
15 /usr/include/x86_64-linux-gnu/gnu/stubs.h \
16 /usr/include/x86_64-linux-gnu/gnu/stubs-64.h \
17 /usr/include/x86_64-linux-gnu/c++/13/bits/cpu_defines.h \
18 /usr/include/c++/13/pstl/pstl_config.h /usr/include/stdlib.h \
19 /usr/include/x86_64-linux-gnu/bits/libc-header-start.h \
20 /usr/lib/gcc/x86_64-linux-gnu/13/include/stddef.h \
21 /usr/include/x86_64-linux-gnu/bits/waitflags.h \
22 /usr/include/x86_64-linux-gnu/bits/waitstatus.h \
23 /usr/include/x86_64-linux-gnu/bits/floatn.h \
24 /usr/include/x86_64-linux-gnu/bits/floatn-common.h \
25 /usr/include/x86_64-linux-gnu/bits/types/locale_t.h \
26 /usr/include/x86_64-linux-gnu/bits/types/__locale_t.h \
27 /usr/include/x86_64-linux-gnu/sys/types.h \
28 /usr/include/x86_64-linux-gnu/bits/types.h \
29 /usr/include/x86_64-linux-gnu/bits/typesizes.h \
30 /usr/include/x86_64-linux-gnu/bits/time64.h \
31 /usr/include/x86_64-linux-gnu/bits/types/clock_t.h \
32 /usr/include/x86_64-linux-gnu/bits/types/clockid_t.h \
33 /usr/include/x86_64-linux-gnu/bits/types/time_t.h \
34 /usr/include/x86_64-linux-gnu/bits/types/timer_t.h \
35 /usr/include/x86_64-linux-gnu/bits/stdint-intn.h /usr/include/endian.h \
36 /usr/include/x86_64-linux-gnu/bits/endian.h \
37 /usr/include/x86_64-linux-gnu/bits/endianness.h \
38 /usr/include/x86_64-linux-gnu/bits/byteswap.h \
39 /usr/include/x86_64-linux-gnu/bits/uintn-identity.h \
40 /usr/include/x86_64-linux-gnu/sys/select.h \
41 /usr/include/x86_64-linux-gnu/bits/select.h \
42 /usr/include/x86_64-linux-gnu/bits/types/sigset_t.h \
43 /usr/include/x86_64-linux-gnu/bits/types/__sigset_t.h \
44 /usr/include/x86_64-linux-gnu/bits/types/struct_timeval.h \
45 /usr/include/x86_64-linux-gnu/bits/types/struct_timespec.h \
46 /usr/include/x86_64-linux-gnu/bits/select2.h \
47 /usr/include/x86_64-linux-gnu/bits/select-decl.h \
48 /usr/include/x86_64-linux-gnu/bits/pthreadtypes.h \
49 /usr/include/x86_64-linux-gnu/bits/thread-shared-types.h \
50 /usr/include/x86_64-linux-gnu/bits/pthreadtypes-arch.h \
51 /usr/include/x86_64-linux-gnu/bits/atomic_wide_counter.h \
52 /usr/include/x86_64-linux-gnu/bits/struct_mutex.h \
53 /usr/include/x86_64-linux-gnu/bits/struct_rwlock.h /usr/include/alloca.h \
54 /usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h \
55 /usr/include/x86_64-linux-gnu/bits/stdlib-float.h \
56 /usr/include/x86_64-linux-gnu/bits/stdlib.h \
57 /usr/include/c++/13/bits/std_abs.h \
58 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdint.h /usr/include/stdint.h \
59 /usr/include/x86_64-linux-gnu/bits/wchar.h \
60 /usr/include/x86_64-linux-gnu/bits/stdint-uintn.h \
61 /usr/include/x86_64-linux-gnu/bits/stdint-least.h /usr/include/stdio.h \
62 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdarg.h \
63 /usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h \
64 /usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h \
65 /usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h \
66 /usr/include/x86_64-linux-gnu/bits/types/__FILE.h \
67 /usr/include/x86_64-linux-gnu/bits/types/FILE.h \
68 /usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h \
69 /usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h \
70 /usr/include/x86_64-linux-gnu/bits/stdio_lim.h \
71 /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h \
72 /usr/include/x86_64-linux-gnu/bits/stdio.h \
73 /usr/include/x86_64-linux-gnu/bits/stdio2.h /usr/include/string.h \
74 /usr/include/strings.h \
75 /usr/include/x86_64-linux-gnu/bits/strings_fortified.h \
76 /usr/include/x86_64-linux-gnu/bits/string_fortified.h \
77 /usr/include/c++/13/math.h /usr/include/c++/13/cmath \
78 /usr/include/c++/13/bits/requires_hosted.h \
79 /usr/include/c++/13/bits/cpp_type_traits.h \
80 /usr/include/c++/13/ext/type_traits.h /usr/include/math.h \
81 /usr/include/x86_64-linux-gnu/bits/math-vector.h \
82 /usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h \
83 /usr/include/x86_64-linux-gnu/bits/flt-eval-method.h \
84 /usr/include/x86_64-linux-gnu/bits/fp-logb.h \
85 /usr/include/x86_64-linux-gnu/bits/fp-fast.h \
86 /usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h \
87 /usr/include/x86_64-linux-gnu/bits/mathcalls.h \
88 /usr/include/x86_64-linux-gnu/bits/mathcalls-narrow.h \
89 /usr/include/x86_64-linux-gnu/bits/iscanonical.h \
90 /usr/include/c++/13/bits/specfun.h \
91 /usr/include/c++/13/bits/stl_algobase.h \
92 /usr/include/c++/13/bits/functexcept.h \
93 /usr/include/c++/13/bits/exception_defines.h \
94 /usr/include/c++/13/ext/numeric_traits.h \
95 /usr/include/c++/13/bits/stl_pair.h /usr/include/c++/13/type_traits \
96 /usr/include/c++/13/bits/move.h /usr/include/c++/13/bits/utility.h \
97 /usr/include/c++/13/compare /usr/include/c++/13/concepts \
98 /usr/include/c++/13/bits/stl_iterator_base_types.h \
99 /usr/include/c++/13/bits/iterator_concepts.h \
100 /usr/include/c++/13/bits/ptr_traits.h \
101 /usr/include/c++/13/bits/ranges_cmp.h \
102 /usr/include/c++/13/bits/stl_iterator_base_funcs.h \
103 /usr/include/c++/13/bits/concept_check.h \
104 /usr/include/c++/13/debug/assertions.h \
105 /usr/include/c++/13/bits/stl_iterator.h /usr/include/c++/13/new \
106 /usr/include/c++/13/bits/exception.h \
107 /usr/include/c++/13/bits/stl_construct.h \
108 /usr/include/c++/13/debug/debug.h \
109 /usr/include/c++/13/bits/predefined_ops.h /usr/include/c++/13/bit \
110 /usr/include/c++/13/limits /usr/include/c++/13/tr1/gamma.tcc \
111 /usr/include/c++/13/tr1/special_function_util.h \
112 /usr/include/c++/13/tr1/bessel_function.tcc \
113 /usr/include/c++/13/tr1/beta_function.tcc \
114 /usr/include/c++/13/tr1/ell_integral.tcc \
115 /usr/include/c++/13/tr1/exp_integral.tcc \
116 /usr/include/c++/13/tr1/hypergeometric.tcc \
117 /usr/include/c++/13/tr1/legendre_function.tcc \
118 /usr/include/c++/13/tr1/modified_bessel_func.tcc \
119 /usr/include/c++/13/tr1/poly_hermite.tcc \
120 /usr/include/c++/13/tr1/poly_laguerre.tcc \
121 /usr/include/c++/13/tr1/riemann_zeta.tcc utility/src/align/align-ssw.H \
122 /usr/include/c++/13/cstdio /usr/include/c++/13/cstdint \
123 /usr/include/c++/13/cstring utility/src/htslib/hts/sam.h \
124 /usr/include/errno.h /usr/include/x86_64-linux-gnu/bits/errno.h \
125 /usr/include/linux/errno.h /usr/include/x86_64-linux-gnu/asm/errno.h \
126 /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h \
127 /usr/include/x86_64-linux-gnu/bits/types/error_t.h \
128 utility/src/htslib/hts/hts.h /usr/include/inttypes.h \
129 utility/src/htslib/hts/hts_defs.h utility/src/htslib/hts/hts_log.h \
130 utility/src/htslib/hts/kstring.h \
131 /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h \
132 /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h \
133 /usr/include/limits.h /usr/include/x86_64-linux-gnu/bits/posix1_lim.h \
134 /usr/include/x86_64-linux-gnu/bits/local_lim.h \
135 /usr/include/linux/limits.h \
136 /usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h \
137 /usr/include/x86_64-linux-gnu/bits/posix2_lim.h \
138 /usr/include/x86_64-linux-gnu/bits/xopen_lim.h \
139 /usr/include/x86_64-linux-gnu/bits/uio_lim.h \
140 utility/src/htslib/hts/kroundup.h utility/src/htslib/hts/hts_endian.h
141 utility/src/align/align-ssw.C /usr/include/stdc-predef.h :
142 /usr/lib/gcc/x86_64-linux-gnu/13/include/emmintrin.h :
143 /usr/lib/gcc/x86_64-linux-gnu/13/include/xmmintrin.h :
144 /usr/lib/gcc/x86_64-linux-gnu/13/include/mmintrin.h :
145 /usr/lib/gcc/x86_64-linux-gnu/13/include/mm_malloc.h :
146 /usr/include/c++/13/stdlib.h /usr/include/c++/13/cstdlib :
147 /usr/include/x86_64-linux-gnu/c++/13/bits/c++config.h :
148 /usr/include/x86_64-linux-gnu/c++/13/bits/os_defines.h :
149 /usr/include/features.h /usr/include/features-time64.h :
150 /usr/include/x86_64-linux-gnu/bits/wordsize.h :
151 /usr/include/x86_64-linux-gnu/bits/timesize.h :
152 /usr/include/x86_64-linux-gnu/sys/cdefs.h :
153 /usr/include/x86_64-linux-gnu/bits/long-double.h :
154 /usr/include/x86_64-linux-gnu/gnu/stubs.h :
155 /usr/include/x86_64-linux-gnu/gnu/stubs-64.h :
156 /usr/include/x86_64-linux-gnu/c++/13/bits/cpu_defines.h :
157 /usr/include/c++/13/pstl/pstl_config.h /usr/include/stdlib.h :
158 /usr/include/x86_64-linux-gnu/bits/libc-header-start.h :
159 /usr/lib/gcc/x86_64-linux-gnu/13/include/stddef.h :
160 /usr/include/x86_64-linux-gnu/bits/waitflags.h :
161 /usr/include/x86_64-linux-gnu/bits/waitstatus.h :
162 /usr/include/x86_64-linux-gnu/bits/floatn.h :
163 /usr/include/x86_64-linux-gnu/bits/floatn-common.h :
164 /usr/include/x86_64-linux-gnu/bits/types/locale_t.h :
165 /usr/include/x86_64-linux-gnu/bits/types/__locale_t.h :
166 /usr/include/x86_64-linux-gnu/sys/types.h :
167 /usr/include/x86_64-linux-gnu/bits/types.h :
168 /usr/include/x86_64-linux-gnu/bits/typesizes.h :
169 /usr/include/x86_64-linux-gnu/bits/time64.h :
170 /usr/include/x86_64-linux-gnu/bits/types/clock_t.h :
171 /usr/include/x86_64-linux-gnu/bits/types/clockid_t.h :
172 /usr/include/x86_64-linux-gnu/bits/types/time_t.h :
173 /usr/include/x86_64-linux-gnu/bits/types/timer_t.h :
174 /usr/include/x86_64-linux-gnu/bits/stdint-intn.h /usr/include/endian.h :
175 /usr/include/x86_64-linux-gnu/bits/endian.h :
176 /usr/include/x86_64-linux-gnu/bits/endianness.h :
177 /usr/include/x86_64-linux-gnu/bits/byteswap.h :
178 /usr/include/x86_64-linux-gnu/bits/uintn-identity.h :
179 /usr/include/x86_64-linux-gnu/sys/select.h :
180 /usr/include/x86_64-linux-gnu/bits/select.h :
181 /usr/include/x86_64-linux-gnu/bits/types/sigset_t.h :
182 /usr/include/x86_64-linux-gnu/bits/types/__sigset_t.h :
183 /usr/include/x86_64-linux-gnu/bits/types/struct_timeval.h :
184 /usr/include/x86_64-linux-gnu/bits/types/struct_timespec.h :
185 /usr/include/x86_64-linux-gnu/bits/select2.h :
186 /usr/include/x86_64-linux-gnu/bits/select-decl.h :
187 /usr/include/x86_64-linux-gnu/bits/pthreadtypes.h :
188 /usr/include/x86_64-linux-gnu/bits/thread-shared-types.h :
189 /usr/include/x86_64-linux-gnu/bits/pthreadtypes-arch.h :
190 /usr/include/x86_64-linux-gnu/bits/atomic_wide_counter.h :
191 /usr/include/x86_64-linux-gnu/bits/struct_mutex.h :
192 /usr/include/x86_64-linux-gnu/bits/struct_rwlock.h /usr/include/alloca.h :
193 /usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h :
194 /usr/include/x86_64-linux-gnu/bits/stdlib-float.h :
195 /usr/include/x86_64-linux-gnu/bits/stdlib.h :
196 /usr/include/c++/13/bits/std_abs.h :
197 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdint.h /usr/include/stdint.h :
198 /usr/include/x86_64-linux-gnu/bits/wchar.h :
199 /usr/include/x86_64-linux-gnu/bits/stdint-uintn.h :
200 /usr/include/x86_64-linux-gnu/bits/stdint-least.h /usr/include/stdio.h :
201 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdarg.h :
202 /usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h :
203 /usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h :
204 /usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h :
205 /usr/include/x86_64-linux-gnu/bits/types/__FILE.h :
206 /usr/include/x86_64-linux-gnu/bits/types/FILE.h :
207 /usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h :
208 /usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h :
209 /usr/include/x86_64-linux-gnu/bits/stdio_lim.h :
210 /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h :
211 /usr/include/x86_64-linux-gnu/bits/stdio.h :
212 /usr/include/x86_64-linux-gnu/bits/stdio2.h /usr/include/string.h :
213 /usr/include/strings.h :
214 /usr/include/x86_64-linux-gnu/bits/strings_fortified.h :
215 /usr/include/x86_64-linux-gnu/bits/string_fortified.h :
216 /usr/include/c++/13/math.h /usr/include/c++/13/cmath :
217 /usr/include/c++/13/bits/requires_hosted.h :
218 /usr/include/c++/13/bits/cpp_type_traits.h :
219 /usr/include/c++/13/ext/type_traits.h /usr/include/math.h :
220 /usr/include/x86_64-linux-gnu/bits/math-vector.h :
221 /usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h :
222 /usr/include/x86_64-linux-gnu/bits/flt-eval-method.h :
223 /usr/include/x86_64-linux-gnu/bits/fp-logb.h :
224 /usr/include/x86_64-linux-gnu/bits/fp-fast.h :
225 /usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h :
226 /usr/include/x86_64-linux-gnu/bits/mathcalls.h :
227 /usr/include/x86_64-linux-gnu/bits/mathcalls-narrow.h :
228 /usr/include/x86_64-linux-gnu/bits/iscanonical.h :
229 /usr/include/c++/13/bits/specfun.h :
230 /usr/include/c++/13/bits/stl_algobase.h :
231 /usr/include/c++/13/bits/functexcept.h :
232 /usr/include/c++/13/bits/exception_defines.h :
233 /usr/include/c++/13/ext/numeric_traits.h :
234 /usr/include/c++/13/bits/stl_pair.h /usr/include/c++/13/type_traits :
235 /usr/include/c++/13/bits/move.h /usr/include/c++/13/bits/utility.h :
236 /usr/include/c++/13/compare /usr/include/c++/13/concepts :
237 /usr/include/c++/13/bits/stl_iterator_base_types.h :
238 /usr/include/c++/13/bits/iterator_concepts.h :
239 /usr/include/c++/13/bits/ptr_traits.h :
240 /usr/include/c++/13/bits/ranges_cmp.h :
241 /usr/include/c++/13/bits/stl_iterator_base_funcs.h :
242 /usr/include/c++/13/bits/concept_check.h :
243 /usr/include/c++/13/debug/assertions.h :
244 /usr/include/c++/13/bits/stl_iterator.h /usr/include/c++/13/new :
245 /usr/include/c++/13/bits/exception.h :
246 /usr/include/c++/13/bits/stl_construct.h :
247 /usr/include/c++/13/debug/debug.h :
248 /usr/include/c++/13/bits/predefined_ops.h /usr/include/c++/13/bit :
249 /usr/include/c++/13/limits /usr/include/c++/13/tr1/gamma.tcc :
250 /usr/include/c++/13/tr1/special_function_util.h :
251 /usr/include/c++/13/tr1/bessel_function.tcc :
252 /usr/include/c++/13/tr1/beta_function.tcc :
253 /usr/include/c++/13/tr1/ell_integral.tcc :
254 /usr/include/c++/13/tr1/exp_integral.tcc :
255 /usr/include/c++/13/tr1/hypergeometric.tcc :
256 /usr/include/c++/13/tr1/legendre_function.tcc :
257 /usr/include/c++/13/tr1/modified_bessel_func.tcc :
258 /usr/include/c++/13/tr1/poly_hermite.tcc :
259 /usr/include/c++/13/tr1/poly_laguerre.tcc :
260 /usr/include/c++/13/tr1/riemann_zeta.tcc utility/src/align/align-ssw.H :
261 /usr/include/c++/13/cstdio /usr/include/c++/13/cstdint :
262 /usr/include/c++/13/cstring utility/src/htslib/hts/sam.h :
263 /usr/include/errno.h /usr/include/x86_64-linux-gnu/bits/errno.h :
264 /usr/include/linux/errno.h /usr/include/x86_64-linux-gnu/asm/errno.h :
265 /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h :
266 /usr/include/x86_64-linux-gnu/bits/types/error_t.h :
267 utility/src/htslib/hts/hts.h /usr/include/inttypes.h :
268 utility/src/htslib/hts/hts_defs.h utility/src/htslib/hts/hts_log.h :
269 utility/src/htslib/hts/kstring.h :
270 /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h :
271 /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h :
272 /usr/include/limits.h /usr/include/x86_64-linux-gnu/bits/posix1_lim.h :
273 /usr/include/x86_64-linux-gnu/bits/local_lim.h :
274 /usr/include/linux/limits.h :
275 /usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h :
276 /usr/include/x86_64-linux-gnu/bits/posix2_lim.h :
277 /usr/include/x86_64-linux-gnu/bits/xopen_lim.h :
278 /usr/include/x86_64-linux-gnu/bits/uio_lim.h :
279 utility/src/htslib/hts/kroundup.h utility/src/htslib/hts/hts_endian.h :