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annotate seqrequester/build/obj/lib/libseqrequester.a/utility/src/align/align-ssw.P @ 1:1085e094cf5f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty
author fubar
date Sat, 13 Jul 2024 12:39:06 +0000
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1085e094cf5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty
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1 /home/ross/rossgit/microsatbed/seqrequester/build/obj/lib/libseqrequester.a/utility/src/align/align-ssw.o: \
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2 utility/src/align/align-ssw.C /usr/include/stdc-predef.h \
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3 /usr/lib/gcc/x86_64-linux-gnu/13/include/emmintrin.h \
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4 /usr/lib/gcc/x86_64-linux-gnu/13/include/xmmintrin.h \
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5 /usr/lib/gcc/x86_64-linux-gnu/13/include/mmintrin.h \
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6 /usr/lib/gcc/x86_64-linux-gnu/13/include/mm_malloc.h \
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7 /usr/include/c++/13/stdlib.h /usr/include/c++/13/cstdlib \
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8 /usr/include/x86_64-linux-gnu/c++/13/bits/c++config.h \
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9 /usr/include/x86_64-linux-gnu/c++/13/bits/os_defines.h \
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10 /usr/include/features.h /usr/include/features-time64.h \
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11 /usr/include/x86_64-linux-gnu/bits/wordsize.h \
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12 /usr/include/x86_64-linux-gnu/bits/timesize.h \
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13 /usr/include/x86_64-linux-gnu/sys/cdefs.h \
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14 /usr/include/x86_64-linux-gnu/bits/long-double.h \
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15 /usr/include/x86_64-linux-gnu/gnu/stubs.h \
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16 /usr/include/x86_64-linux-gnu/gnu/stubs-64.h \
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17 /usr/include/x86_64-linux-gnu/c++/13/bits/cpu_defines.h \
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18 /usr/include/c++/13/pstl/pstl_config.h /usr/include/stdlib.h \
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19 /usr/include/x86_64-linux-gnu/bits/libc-header-start.h \
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20 /usr/lib/gcc/x86_64-linux-gnu/13/include/stddef.h \
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21 /usr/include/x86_64-linux-gnu/bits/waitflags.h \
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22 /usr/include/x86_64-linux-gnu/bits/waitstatus.h \
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23 /usr/include/x86_64-linux-gnu/bits/floatn.h \
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24 /usr/include/x86_64-linux-gnu/bits/floatn-common.h \
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25 /usr/include/x86_64-linux-gnu/bits/types/locale_t.h \
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26 /usr/include/x86_64-linux-gnu/bits/types/__locale_t.h \
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27 /usr/include/x86_64-linux-gnu/sys/types.h \
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28 /usr/include/x86_64-linux-gnu/bits/types.h \
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29 /usr/include/x86_64-linux-gnu/bits/typesizes.h \
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30 /usr/include/x86_64-linux-gnu/bits/time64.h \
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31 /usr/include/x86_64-linux-gnu/bits/types/clock_t.h \
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32 /usr/include/x86_64-linux-gnu/bits/types/clockid_t.h \
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33 /usr/include/x86_64-linux-gnu/bits/types/time_t.h \
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34 /usr/include/x86_64-linux-gnu/bits/types/timer_t.h \
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35 /usr/include/x86_64-linux-gnu/bits/stdint-intn.h /usr/include/endian.h \
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36 /usr/include/x86_64-linux-gnu/bits/endian.h \
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37 /usr/include/x86_64-linux-gnu/bits/endianness.h \
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38 /usr/include/x86_64-linux-gnu/bits/byteswap.h \
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39 /usr/include/x86_64-linux-gnu/bits/uintn-identity.h \
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40 /usr/include/x86_64-linux-gnu/sys/select.h \
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41 /usr/include/x86_64-linux-gnu/bits/select.h \
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42 /usr/include/x86_64-linux-gnu/bits/types/sigset_t.h \
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43 /usr/include/x86_64-linux-gnu/bits/types/__sigset_t.h \
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44 /usr/include/x86_64-linux-gnu/bits/types/struct_timeval.h \
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45 /usr/include/x86_64-linux-gnu/bits/types/struct_timespec.h \
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46 /usr/include/x86_64-linux-gnu/bits/select2.h \
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47 /usr/include/x86_64-linux-gnu/bits/select-decl.h \
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48 /usr/include/x86_64-linux-gnu/bits/pthreadtypes.h \
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49 /usr/include/x86_64-linux-gnu/bits/thread-shared-types.h \
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50 /usr/include/x86_64-linux-gnu/bits/pthreadtypes-arch.h \
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51 /usr/include/x86_64-linux-gnu/bits/atomic_wide_counter.h \
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52 /usr/include/x86_64-linux-gnu/bits/struct_mutex.h \
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53 /usr/include/x86_64-linux-gnu/bits/struct_rwlock.h /usr/include/alloca.h \
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54 /usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h \
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55 /usr/include/x86_64-linux-gnu/bits/stdlib-float.h \
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56 /usr/include/x86_64-linux-gnu/bits/stdlib.h \
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57 /usr/include/c++/13/bits/std_abs.h \
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58 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdint.h /usr/include/stdint.h \
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59 /usr/include/x86_64-linux-gnu/bits/wchar.h \
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60 /usr/include/x86_64-linux-gnu/bits/stdint-uintn.h \
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61 /usr/include/x86_64-linux-gnu/bits/stdint-least.h /usr/include/stdio.h \
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62 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdarg.h \
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63 /usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h \
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64 /usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h \
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65 /usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h \
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66 /usr/include/x86_64-linux-gnu/bits/types/__FILE.h \
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67 /usr/include/x86_64-linux-gnu/bits/types/FILE.h \
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68 /usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h \
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69 /usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h \
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70 /usr/include/x86_64-linux-gnu/bits/stdio_lim.h \
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71 /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h \
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72 /usr/include/x86_64-linux-gnu/bits/stdio.h \
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73 /usr/include/x86_64-linux-gnu/bits/stdio2.h /usr/include/string.h \
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74 /usr/include/strings.h \
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75 /usr/include/x86_64-linux-gnu/bits/strings_fortified.h \
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76 /usr/include/x86_64-linux-gnu/bits/string_fortified.h \
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77 /usr/include/c++/13/math.h /usr/include/c++/13/cmath \
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78 /usr/include/c++/13/bits/requires_hosted.h \
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79 /usr/include/c++/13/bits/cpp_type_traits.h \
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80 /usr/include/c++/13/ext/type_traits.h /usr/include/math.h \
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81 /usr/include/x86_64-linux-gnu/bits/math-vector.h \
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82 /usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h \
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83 /usr/include/x86_64-linux-gnu/bits/flt-eval-method.h \
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84 /usr/include/x86_64-linux-gnu/bits/fp-logb.h \
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85 /usr/include/x86_64-linux-gnu/bits/fp-fast.h \
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86 /usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h \
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87 /usr/include/x86_64-linux-gnu/bits/mathcalls.h \
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88 /usr/include/x86_64-linux-gnu/bits/mathcalls-narrow.h \
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89 /usr/include/x86_64-linux-gnu/bits/iscanonical.h \
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90 /usr/include/c++/13/bits/specfun.h \
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91 /usr/include/c++/13/bits/stl_algobase.h \
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92 /usr/include/c++/13/bits/functexcept.h \
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93 /usr/include/c++/13/bits/exception_defines.h \
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94 /usr/include/c++/13/ext/numeric_traits.h \
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95 /usr/include/c++/13/bits/stl_pair.h /usr/include/c++/13/type_traits \
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96 /usr/include/c++/13/bits/move.h /usr/include/c++/13/bits/utility.h \
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97 /usr/include/c++/13/compare /usr/include/c++/13/concepts \
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98 /usr/include/c++/13/bits/stl_iterator_base_types.h \
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99 /usr/include/c++/13/bits/iterator_concepts.h \
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100 /usr/include/c++/13/bits/ptr_traits.h \
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101 /usr/include/c++/13/bits/ranges_cmp.h \
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102 /usr/include/c++/13/bits/stl_iterator_base_funcs.h \
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103 /usr/include/c++/13/bits/concept_check.h \
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104 /usr/include/c++/13/debug/assertions.h \
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105 /usr/include/c++/13/bits/stl_iterator.h /usr/include/c++/13/new \
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106 /usr/include/c++/13/bits/exception.h \
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107 /usr/include/c++/13/bits/stl_construct.h \
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108 /usr/include/c++/13/debug/debug.h \
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109 /usr/include/c++/13/bits/predefined_ops.h /usr/include/c++/13/bit \
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110 /usr/include/c++/13/limits /usr/include/c++/13/tr1/gamma.tcc \
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111 /usr/include/c++/13/tr1/special_function_util.h \
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112 /usr/include/c++/13/tr1/bessel_function.tcc \
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113 /usr/include/c++/13/tr1/beta_function.tcc \
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114 /usr/include/c++/13/tr1/ell_integral.tcc \
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115 /usr/include/c++/13/tr1/exp_integral.tcc \
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116 /usr/include/c++/13/tr1/hypergeometric.tcc \
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117 /usr/include/c++/13/tr1/legendre_function.tcc \
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118 /usr/include/c++/13/tr1/modified_bessel_func.tcc \
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119 /usr/include/c++/13/tr1/poly_hermite.tcc \
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120 /usr/include/c++/13/tr1/poly_laguerre.tcc \
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121 /usr/include/c++/13/tr1/riemann_zeta.tcc utility/src/align/align-ssw.H \
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122 /usr/include/c++/13/cstdio /usr/include/c++/13/cstdint \
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123 /usr/include/c++/13/cstring utility/src/htslib/hts/sam.h \
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124 /usr/include/errno.h /usr/include/x86_64-linux-gnu/bits/errno.h \
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125 /usr/include/linux/errno.h /usr/include/x86_64-linux-gnu/asm/errno.h \
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126 /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h \
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127 /usr/include/x86_64-linux-gnu/bits/types/error_t.h \
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128 utility/src/htslib/hts/hts.h /usr/include/inttypes.h \
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129 utility/src/htslib/hts/hts_defs.h utility/src/htslib/hts/hts_log.h \
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130 utility/src/htslib/hts/kstring.h \
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131 /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h \
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132 /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h \
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133 /usr/include/limits.h /usr/include/x86_64-linux-gnu/bits/posix1_lim.h \
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134 /usr/include/x86_64-linux-gnu/bits/local_lim.h \
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135 /usr/include/linux/limits.h \
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136 /usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h \
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137 /usr/include/x86_64-linux-gnu/bits/posix2_lim.h \
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138 /usr/include/x86_64-linux-gnu/bits/xopen_lim.h \
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139 /usr/include/x86_64-linux-gnu/bits/uio_lim.h \
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140 utility/src/htslib/hts/kroundup.h utility/src/htslib/hts/hts_endian.h
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141 utility/src/align/align-ssw.C /usr/include/stdc-predef.h :
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142 /usr/lib/gcc/x86_64-linux-gnu/13/include/emmintrin.h :
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143 /usr/lib/gcc/x86_64-linux-gnu/13/include/xmmintrin.h :
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144 /usr/lib/gcc/x86_64-linux-gnu/13/include/mmintrin.h :
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145 /usr/lib/gcc/x86_64-linux-gnu/13/include/mm_malloc.h :
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146 /usr/include/c++/13/stdlib.h /usr/include/c++/13/cstdlib :
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147 /usr/include/x86_64-linux-gnu/c++/13/bits/c++config.h :
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148 /usr/include/x86_64-linux-gnu/c++/13/bits/os_defines.h :
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149 /usr/include/features.h /usr/include/features-time64.h :
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150 /usr/include/x86_64-linux-gnu/bits/wordsize.h :
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151 /usr/include/x86_64-linux-gnu/bits/timesize.h :
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152 /usr/include/x86_64-linux-gnu/sys/cdefs.h :
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153 /usr/include/x86_64-linux-gnu/bits/long-double.h :
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154 /usr/include/x86_64-linux-gnu/gnu/stubs.h :
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155 /usr/include/x86_64-linux-gnu/gnu/stubs-64.h :
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156 /usr/include/x86_64-linux-gnu/c++/13/bits/cpu_defines.h :
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157 /usr/include/c++/13/pstl/pstl_config.h /usr/include/stdlib.h :
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158 /usr/include/x86_64-linux-gnu/bits/libc-header-start.h :
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159 /usr/lib/gcc/x86_64-linux-gnu/13/include/stddef.h :
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160 /usr/include/x86_64-linux-gnu/bits/waitflags.h :
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161 /usr/include/x86_64-linux-gnu/bits/waitstatus.h :
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162 /usr/include/x86_64-linux-gnu/bits/floatn.h :
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163 /usr/include/x86_64-linux-gnu/bits/floatn-common.h :
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164 /usr/include/x86_64-linux-gnu/bits/types/locale_t.h :
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165 /usr/include/x86_64-linux-gnu/bits/types/__locale_t.h :
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166 /usr/include/x86_64-linux-gnu/sys/types.h :
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167 /usr/include/x86_64-linux-gnu/bits/types.h :
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168 /usr/include/x86_64-linux-gnu/bits/typesizes.h :
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169 /usr/include/x86_64-linux-gnu/bits/time64.h :
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170 /usr/include/x86_64-linux-gnu/bits/types/clock_t.h :
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171 /usr/include/x86_64-linux-gnu/bits/types/clockid_t.h :
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172 /usr/include/x86_64-linux-gnu/bits/types/time_t.h :
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173 /usr/include/x86_64-linux-gnu/bits/types/timer_t.h :
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174 /usr/include/x86_64-linux-gnu/bits/stdint-intn.h /usr/include/endian.h :
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175 /usr/include/x86_64-linux-gnu/bits/endian.h :
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176 /usr/include/x86_64-linux-gnu/bits/endianness.h :
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177 /usr/include/x86_64-linux-gnu/bits/byteswap.h :
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178 /usr/include/x86_64-linux-gnu/bits/uintn-identity.h :
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179 /usr/include/x86_64-linux-gnu/sys/select.h :
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180 /usr/include/x86_64-linux-gnu/bits/select.h :
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181 /usr/include/x86_64-linux-gnu/bits/types/sigset_t.h :
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182 /usr/include/x86_64-linux-gnu/bits/types/__sigset_t.h :
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183 /usr/include/x86_64-linux-gnu/bits/types/struct_timeval.h :
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184 /usr/include/x86_64-linux-gnu/bits/types/struct_timespec.h :
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185 /usr/include/x86_64-linux-gnu/bits/select2.h :
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186 /usr/include/x86_64-linux-gnu/bits/select-decl.h :
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187 /usr/include/x86_64-linux-gnu/bits/pthreadtypes.h :
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188 /usr/include/x86_64-linux-gnu/bits/thread-shared-types.h :
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189 /usr/include/x86_64-linux-gnu/bits/pthreadtypes-arch.h :
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190 /usr/include/x86_64-linux-gnu/bits/atomic_wide_counter.h :
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191 /usr/include/x86_64-linux-gnu/bits/struct_mutex.h :
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192 /usr/include/x86_64-linux-gnu/bits/struct_rwlock.h /usr/include/alloca.h :
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193 /usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h :
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194 /usr/include/x86_64-linux-gnu/bits/stdlib-float.h :
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195 /usr/include/x86_64-linux-gnu/bits/stdlib.h :
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196 /usr/include/c++/13/bits/std_abs.h :
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197 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdint.h /usr/include/stdint.h :
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198 /usr/include/x86_64-linux-gnu/bits/wchar.h :
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199 /usr/include/x86_64-linux-gnu/bits/stdint-uintn.h :
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200 /usr/include/x86_64-linux-gnu/bits/stdint-least.h /usr/include/stdio.h :
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201 /usr/lib/gcc/x86_64-linux-gnu/13/include/stdarg.h :
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202 /usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h :
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203 /usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h :
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204 /usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h :
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205 /usr/include/x86_64-linux-gnu/bits/types/__FILE.h :
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206 /usr/include/x86_64-linux-gnu/bits/types/FILE.h :
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207 /usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h :
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208 /usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h :
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209 /usr/include/x86_64-linux-gnu/bits/stdio_lim.h :
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210 /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h :
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211 /usr/include/x86_64-linux-gnu/bits/stdio.h :
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212 /usr/include/x86_64-linux-gnu/bits/stdio2.h /usr/include/string.h :
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213 /usr/include/strings.h :
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214 /usr/include/x86_64-linux-gnu/bits/strings_fortified.h :
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215 /usr/include/x86_64-linux-gnu/bits/string_fortified.h :
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216 /usr/include/c++/13/math.h /usr/include/c++/13/cmath :
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217 /usr/include/c++/13/bits/requires_hosted.h :
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218 /usr/include/c++/13/bits/cpp_type_traits.h :
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219 /usr/include/c++/13/ext/type_traits.h /usr/include/math.h :
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220 /usr/include/x86_64-linux-gnu/bits/math-vector.h :
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221 /usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h :
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222 /usr/include/x86_64-linux-gnu/bits/flt-eval-method.h :
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223 /usr/include/x86_64-linux-gnu/bits/fp-logb.h :
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224 /usr/include/x86_64-linux-gnu/bits/fp-fast.h :
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225 /usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h :
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226 /usr/include/x86_64-linux-gnu/bits/mathcalls.h :
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227 /usr/include/x86_64-linux-gnu/bits/mathcalls-narrow.h :
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228 /usr/include/x86_64-linux-gnu/bits/iscanonical.h :
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229 /usr/include/c++/13/bits/specfun.h :
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230 /usr/include/c++/13/bits/stl_algobase.h :
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231 /usr/include/c++/13/bits/functexcept.h :
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232 /usr/include/c++/13/bits/exception_defines.h :
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233 /usr/include/c++/13/ext/numeric_traits.h :
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234 /usr/include/c++/13/bits/stl_pair.h /usr/include/c++/13/type_traits :
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235 /usr/include/c++/13/bits/move.h /usr/include/c++/13/bits/utility.h :
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236 /usr/include/c++/13/compare /usr/include/c++/13/concepts :
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237 /usr/include/c++/13/bits/stl_iterator_base_types.h :
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238 /usr/include/c++/13/bits/iterator_concepts.h :
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239 /usr/include/c++/13/bits/ptr_traits.h :
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240 /usr/include/c++/13/bits/ranges_cmp.h :
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241 /usr/include/c++/13/bits/stl_iterator_base_funcs.h :
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242 /usr/include/c++/13/bits/concept_check.h :
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243 /usr/include/c++/13/debug/assertions.h :
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244 /usr/include/c++/13/bits/stl_iterator.h /usr/include/c++/13/new :
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245 /usr/include/c++/13/bits/exception.h :
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246 /usr/include/c++/13/bits/stl_construct.h :
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247 /usr/include/c++/13/debug/debug.h :
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248 /usr/include/c++/13/bits/predefined_ops.h /usr/include/c++/13/bit :
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249 /usr/include/c++/13/limits /usr/include/c++/13/tr1/gamma.tcc :
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250 /usr/include/c++/13/tr1/special_function_util.h :
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251 /usr/include/c++/13/tr1/bessel_function.tcc :
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252 /usr/include/c++/13/tr1/beta_function.tcc :
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253 /usr/include/c++/13/tr1/ell_integral.tcc :
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254 /usr/include/c++/13/tr1/exp_integral.tcc :
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255 /usr/include/c++/13/tr1/hypergeometric.tcc :
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256 /usr/include/c++/13/tr1/legendre_function.tcc :
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257 /usr/include/c++/13/tr1/modified_bessel_func.tcc :
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258 /usr/include/c++/13/tr1/poly_hermite.tcc :
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259 /usr/include/c++/13/tr1/poly_laguerre.tcc :
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260 /usr/include/c++/13/tr1/riemann_zeta.tcc utility/src/align/align-ssw.H :
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261 /usr/include/c++/13/cstdio /usr/include/c++/13/cstdint :
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262 /usr/include/c++/13/cstring utility/src/htslib/hts/sam.h :
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263 /usr/include/errno.h /usr/include/x86_64-linux-gnu/bits/errno.h :
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264 /usr/include/linux/errno.h /usr/include/x86_64-linux-gnu/asm/errno.h :
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265 /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h :
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266 /usr/include/x86_64-linux-gnu/bits/types/error_t.h :
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267 utility/src/htslib/hts/hts.h /usr/include/inttypes.h :
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268 utility/src/htslib/hts/hts_defs.h utility/src/htslib/hts/hts_log.h :
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269 utility/src/htslib/hts/kstring.h :
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270 /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h :
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271 /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h :
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272 /usr/include/limits.h /usr/include/x86_64-linux-gnu/bits/posix1_lim.h :
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273 /usr/include/x86_64-linux-gnu/bits/local_lim.h :
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274 /usr/include/linux/limits.h :
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275 /usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h :
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276 /usr/include/x86_64-linux-gnu/bits/posix2_lim.h :
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277 /usr/include/x86_64-linux-gnu/bits/xopen_lim.h :
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278 /usr/include/x86_64-linux-gnu/bits/uio_lim.h :
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279 utility/src/htslib/hts/kroundup.h utility/src/htslib/hts/hts_endian.h :