Mercurial > repos > fubar_too > toolfactory
diff toolfactory/test-data/generated_xml_sample @ 0:03df06784e56 draft
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author | fubar_too |
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date | Tue, 18 May 2021 08:42:29 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/toolfactory/test-data/generated_xml_sample Tue May 18 08:42:29 2021 +0000 @@ -0,0 +1,53 @@ +<tool name="pyrevpos" id="pyrevpos" version="0.01"> + <!--Source in git at: https://github.com/fubar2/toolfactory--> + <!--Created by test@bx.psu.edu at 11/05/2021 18:27:13 using the Galaxy Tool Factory.--> + <description>positional reverse</description> + <requirements> + <requirement type="package">python</requirement> + </requirements> + <stdio> + <exit_code range="1:" level="fatal"/> + </stdio> + <version_command><![CDATA[echo "0.01"]]></version_command> + <command><![CDATA[python +$runme +$input +$output2]]></command> + <configfiles> + <configfile name="runme"><![CDATA[#raw + +import sys; inp = sys.argv[1]; outp = sys.argv[2]; inlist = open(inp,'r').readlines(); o = open(outp,'w'); rs = [''.join(list(reversed(x.rstrip()))) for x in inlist]; o.write('\n'.join(rs)); o.close() + +#end raw]]></configfile> + </configfiles> + <inputs> + <param name="input" type="data" optional="false" label="input" help="help" format="txt" multiple="false"/> + </inputs> + <outputs> + <data name="output2" format="txt" label="output2" hidden="false"/> + </outputs> + <tests> + <test> + <output name="output2" value="output2_sample" compare="diff" lines_diff="0"/> + <param name="input" value="input_sample"/> + </test> + </tests> + <help><![CDATA[ + +help text goes here + + + +------ + + +Script:: + + import sys; inp = sys.argv[1]; outp = sys.argv[2]; inlist = open(inp,'r').readlines(); o = open(outp,'w'); rs = [''.join(list(reversed(x.rstrip()))) for x in inlist]; o.write('\n'.join(rs)); o.close() + +]]></help> + <citations> + <citation type="doi">10.1093/bioinformatics/bts573</citation> + </citations> +</tool> +