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1 <tool name="pyrevpos" id="pyrevpos" version="0.01">
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2 <!--Source in git at: https://github.com/fubar2/toolfactory-->
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3 <!--Created by test@bx.psu.edu at 11/05/2021 18:27:13 using the Galaxy Tool Factory.-->
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4 <description>positional reverse</description>
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5 <requirements>
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6 <requirement type="package">python</requirement>
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7 </requirements>
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8 <stdio>
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9 <exit_code range="1:" level="fatal"/>
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10 </stdio>
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11 <version_command><![CDATA[echo "0.01"]]></version_command>
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12 <command><![CDATA[python
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13 $runme
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14 $input
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15 $output2]]></command>
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16 <configfiles>
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17 <configfile name="runme"><![CDATA[#raw
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18
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19 import sys; inp = sys.argv[1]; outp = sys.argv[2]; inlist = open(inp,'r').readlines(); o = open(outp,'w'); rs = [''.join(list(reversed(x.rstrip()))) for x in inlist]; o.write('\n'.join(rs)); o.close()
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20
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21 #end raw]]></configfile>
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22 </configfiles>
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23 <inputs>
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24 <param name="input" type="data" optional="false" label="input" help="help" format="txt" multiple="false"/>
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25 </inputs>
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26 <outputs>
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27 <data name="output2" format="txt" label="output2" hidden="false"/>
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28 </outputs>
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29 <tests>
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30 <test>
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31 <output name="output2" value="output2_sample" compare="diff" lines_diff="0"/>
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32 <param name="input" value="input_sample"/>
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33 </test>
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34 </tests>
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35 <help><![CDATA[
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36
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37 help text goes here
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38
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39
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40
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41 ------
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42
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43
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44 Script::
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45
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46 import sys; inp = sys.argv[1]; outp = sys.argv[2]; inlist = open(inp,'r').readlines(); o = open(outp,'w'); rs = [''.join(list(reversed(x.rstrip()))) for x in inlist]; o.write('\n'.join(rs)); o.close()
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47
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48 ]]></help>
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49 <citations>
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50 <citation type="doi">10.1093/bioinformatics/bts573</citation>
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51 </citations>
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52 </tool>
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53
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