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annotate README.rst @ 0:c18157c68134 draft

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"planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
author galaxy-australia
date Mon, 04 Apr 2022 06:26:16 +0000
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children 2e093badc689
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c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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1 Cactus
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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2 ======
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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4 This suite contains a wrapper for the
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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5 `Cactus <github.com/comparativeGenomicsToolkit/cactus>`__ whole-genome
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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6 aligner and another wrapper for exporting the data it generates.
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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8 Requirements
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9 ------------
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c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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11 The developers provide an official Docker container. However, the Docker
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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12 container won’t run unless ``/etc/passwd`` is mounted (`see this
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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13 issue <https://github.com/ComparativeGenomicsToolkit/cactus/issues/677>`__).
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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14 Because of this, it is recommended to run Cactus using Singularity.
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c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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16 Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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17 for a progressive alignment of three chromosome-level, 150 megabase
c18157c68134 "planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
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18 genomes.