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annotate test-data/my_genome_verbose_summary.txt @ 6:015283de3004 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 4b95b96461684de086fe7e8086af9385f3ed7930
author iuc
date Wed, 20 Dec 2023 18:03:16 +0000
parents 24e471d13fe9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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1 1n coverage estimates (Coverage of every haplotype; Don't confuse with genome coverage which is (ploidy * 1n coverage).)
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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2 * User defined 1n coverage:
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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3 * Subset 1n coverage estimate: 24.6
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
diff changeset
4 * Highest peak 1n coverage estimate: 25
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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5 1n coverage used in smudgeplot (one of the three above): 25
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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6 * Proposed ploidy: 2
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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7 * Minimal number of heterozygous loci: 47
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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8 Note: This number is NOT an estimate of the total number heterozygous loci, it's merly setting the lower boundary if the inference of heterozygosity peaks is correct.
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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9 * Proportion of heterozygosity carried by pairs in different genome copies (table)
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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10 genome_copies propotion_of_heterozygosity
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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11 1 2 1
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
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12 * Proportion of heterozygosity carried by paralogs: 0
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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13 * Summary of all detected peaks (table)
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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14 peak kmers [#] kmers [proportion] summit B / (A + B) summit A + B
24e471d13fe9 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
iuc
parents:
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15 1 AB 973 1 0.49 47.57