Mercurial > repos > galaxy-australia > smudgeplot
comparison test-data/my_genome_verbose_summary.txt @ 3:24e471d13fe9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit cbe90253166d9908b68beb36b9488478178d225b
| author | iuc |
|---|---|
| date | Thu, 30 Jun 2022 22:45:21 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 2:e53b0473d575 | 3:24e471d13fe9 |
|---|---|
| 1 1n coverage estimates (Coverage of every haplotype; Don't confuse with genome coverage which is (ploidy * 1n coverage).) | |
| 2 * User defined 1n coverage: | |
| 3 * Subset 1n coverage estimate: 24.6 | |
| 4 * Highest peak 1n coverage estimate: 25 | |
| 5 1n coverage used in smudgeplot (one of the three above): 25 | |
| 6 * Proposed ploidy: 2 | |
| 7 * Minimal number of heterozygous loci: 47 | |
| 8 Note: This number is NOT an estimate of the total number heterozygous loci, it's merly setting the lower boundary if the inference of heterozygosity peaks is correct. | |
| 9 * Proportion of heterozygosity carried by pairs in different genome copies (table) | |
| 10 genome_copies propotion_of_heterozygosity | |
| 11 1 2 1 | |
| 12 * Proportion of heterozygosity carried by paralogs: 0 | |
| 13 * Summary of all detected peaks (table) | |
| 14 peak kmers [#] kmers [proportion] summit B / (A + B) summit A + B | |
| 15 1 AB 973 1 0.49 47.57 |