Mercurial > repos > galaxy-australia > smudgeplot

comparison macros.xml @ 5:5a0ddb4dc3a4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
author iuc
date Thu, 04 May 2023 16:33:09 +0000
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children 015283de3004
comparison
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4:5e0825476fb7 5:5a0ddb4dc3a4
1 <macros>
2 <token name="@TOOL_VERSION@">0.2.5</token>
3 <token name="@VERSION_SUFFIX@">3</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">smudgeplot</requirement>
7 <requirement type="package" version="1.3">meryl</requirement>
8 <requirement type="package" version="2.3.0">kmer-jellyfish</requirement>
9 <requirement type="package" version="1.34">tar</requirement>
10 </requirements>
11 </xml>
12 <xml name="citations">
13 <citations>
14 <citation type="doi">10.1038/s41467-020-14998-3</citation>
15 </citations>
16 </xml>
17 <xml name="xrefs">
18 <xrefs>
19 <xref type="bio.tools">smudgeplots</xref>
20 </xrefs>
21 </xml>
22
23 <xml name="cutoff_macro">
24 <param
25 name="lower_cutoff"
26 min="1"
27 label="Lower kmer cutoff"
28 type="integer"
29 optional="true"
30 help="Optionally set a manual lower limit for filtering kmers with
31 smudgeplot hetkmers. If no value is set, a cutoff will be
32 estimated with smudgeplot cutoff. Use the GenomeScope tool to
33 visualize your kmer histogram when choosing cutoff values."
34 />
35
36 <param
37 name="upper_cutoff"
38 min="1"
39 label="Upper kmer cutoff"
40 type="integer"
41 optional="true"
42 help="Optionally set a manual upper limit for filtering kmers with
43 smudgeplot hetkmers. If no value is set, a cutoff will be
44 estimated with smudgeplot cutoff. Use the GenomeScope tool to
45 visualize your kmer histogram when choosing cutoff values."
46 />
47 </xml>
48 </macros>