Mercurial > repos > galaxy-australia > smudgeplot
view macros.xml @ 5:5a0ddb4dc3a4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
author | iuc |
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date | Thu, 04 May 2023 16:33:09 +0000 |
parents | |
children | 015283de3004 |
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<macros> <token name="@TOOL_VERSION@">0.2.5</token> <token name="@VERSION_SUFFIX@">3</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">smudgeplot</requirement> <requirement type="package" version="1.3">meryl</requirement> <requirement type="package" version="2.3.0">kmer-jellyfish</requirement> <requirement type="package" version="1.34">tar</requirement> </requirements> </xml> <xml name="citations"> <citations> <citation type="doi">10.1038/s41467-020-14998-3</citation> </citations> </xml> <xml name="xrefs"> <xrefs> <xref type="bio.tools">smudgeplots</xref> </xrefs> </xml> <xml name="cutoff_macro"> <param name="lower_cutoff" min="1" label="Lower kmer cutoff" type="integer" optional="true" help="Optionally set a manual lower limit for filtering kmers with smudgeplot hetkmers. If no value is set, a cutoff will be estimated with smudgeplot cutoff. Use the GenomeScope tool to visualize your kmer histogram when choosing cutoff values." /> <param name="upper_cutoff" min="1" label="Upper kmer cutoff" type="integer" optional="true" help="Optionally set a manual upper limit for filtering kmers with smudgeplot hetkmers. If no value is set, a cutoff will be estimated with smudgeplot cutoff. Use the GenomeScope tool to visualize your kmer histogram when choosing cutoff values." /> </xml> </macros>