Mercurial > repos > galaxy-australia > smudgeplot

annotate macros.xml @ 5:5a0ddb4dc3a4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
author iuc
date Thu, 04 May 2023 16:33:09 +0000
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children 015283de3004
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5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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1 <macros>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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2 <token name="@TOOL_VERSION@">0.2.5</token>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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3 <token name="@VERSION_SUFFIX@">3</token>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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4 <xml name="requirements">
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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5 <requirements>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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6 <requirement type="package" version="@TOOL_VERSION@">smudgeplot</requirement>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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7 <requirement type="package" version="1.3">meryl</requirement>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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8 <requirement type="package" version="2.3.0">kmer-jellyfish</requirement>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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9 <requirement type="package" version="1.34">tar</requirement>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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10 </requirements>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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11 </xml>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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12 <xml name="citations">
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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13 <citations>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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14 <citation type="doi">10.1038/s41467-020-14998-3</citation>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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15 </citations>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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16 </xml>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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17 <xml name="xrefs">
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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18 <xrefs>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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19 <xref type="bio.tools">smudgeplots</xref>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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20 </xrefs>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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21 </xml>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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22
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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23 <xml name="cutoff_macro">
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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24 <param
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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25 name="lower_cutoff"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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26 min="1"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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27 label="Lower kmer cutoff"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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28 type="integer"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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29 optional="true"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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30 help="Optionally set a manual lower limit for filtering kmers with
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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31 smudgeplot hetkmers. If no value is set, a cutoff will be
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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32 estimated with smudgeplot cutoff. Use the GenomeScope tool to
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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33 visualize your kmer histogram when choosing cutoff values."
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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34 />
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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35
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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36 <param
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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37 name="upper_cutoff"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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38 min="1"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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39 label="Upper kmer cutoff"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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40 type="integer"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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41 optional="true"
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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42 help="Optionally set a manual upper limit for filtering kmers with
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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43 smudgeplot hetkmers. If no value is set, a cutoff will be
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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44 estimated with smudgeplot cutoff. Use the GenomeScope tool to
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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45 visualize your kmer histogram when choosing cutoff values."
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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46 />
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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47 </xml>
5a0ddb4dc3a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 77e22c56f8da58853100ef1be59ba8d077ab1bf4
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48 </macros>