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comparison idpassemble.xml @ 8:4b418a632bb0 draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 3cc1eda0c28ff138ac19c103c9fbb2a4841beed9"
author galaxyp
date Wed, 26 May 2021 19:57:41 +0000
parents 39eaac8f3f42
children
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7:0fde0095493f 8:4b418a632bb0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="idpassemble" name="idpAssemble" version="@VERSION@.0"> 2 <tool id="idpassemble" name="idpAssemble" version="@VERSION@.0" profile="19.01">
3 <description>Merge IDPicker databases from single files into a merged database, and filters the result at PSM/spectrum/peptide/protein/gene levels.</description> 3 <description>Merge IDPicker databases from single files into a merged database, and filters the result at PSM/spectrum/peptide/protein/gene levels.</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
13 <![CDATA[ 13 <![CDATA[
14 #if len($input) < 2 14 #if len($input) < 2
15 cp '${input}' output && 15 cp '${input}' output &&
16 #end if 16 #end if
17 17
18 export TMPDIR=\$_GALAXY_JOB_TMP_DIR &&
18 idpAssemble 19 idpAssemble
19 -MaxFDRScore $MaxFDRScore 20 -MaxFDRScore $MaxFDRScore
20 -MinDistinctPeptides $filter_at_gene_level_condition.MinDistinctPeptides 21 -MinDistinctPeptides $filter_at_gene_level_condition.MinDistinctPeptides
21 -MinSpectra $filter_at_gene_level_condition.MinSpectra 22 -MinSpectra $filter_at_gene_level_condition.MinSpectra
22 -MinAdditionalPeptides $filter_at_gene_level_condition.MinAdditionalPeptides 23 -MinAdditionalPeptides $filter_at_gene_level_condition.MinAdditionalPeptides