Mercurial > repos > galaxyp > openms_openswathfilesplitter
comparison OpenSwathFileSplitter.xml @ 0:8ddc26f9e2a5 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:38:42 -0500 |
| parents | |
| children | 83f73d0386e0 |
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| -1:000000000000 | 0:8ddc26f9e2a5 |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: []--> | |
| 4 <tool id="OpenSwathFileSplitter" name="OpenSwathFileSplitter" version="2.1.0"> | |
| 5 <description>Splits SWATH files into n files, each containing one window.</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">OpenSwathFileSplitter</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="references"/> | |
| 11 <expand macro="stdio"/> | |
| 12 <expand macro="requirements"/> | |
| 13 <command>OpenSwathFileSplitter | |
| 14 | |
| 15 -in | |
| 16 #for token in $param_in: | |
| 17 $token | |
| 18 #end for | |
| 19 #if $adv_opts.adv_opts_selector=='advanced': | |
| 20 #if $adv_opts.param_outputDirectory: | |
| 21 -outputDirectory "$adv_opts.param_outputDirectory" | |
| 22 #end if | |
| 23 #if $adv_opts.param_force: | |
| 24 -force | |
| 25 #end if | |
| 26 #end if | |
| 27 > $param_stdout | |
| 28 </command> | |
| 29 <inputs> | |
| 30 <param name="param_in" type="data" format="mzxml,mzml" multiple="true" optional="False" size="30" label="Input file (SWATH/DIA file)" help="(-in) "> | |
| 31 <sanitizer> | |
| 32 <valid initial="string.printable"> | |
| 33 <remove value="'"/> | |
| 34 <remove value="""/> | |
| 35 </valid> | |
| 36 </sanitizer> | |
| 37 </param> | |
| 38 <expand macro="advanced_options"> | |
| 39 <param name="param_outputDirectory" type="text" size="30" value="./" label="Output path to store the split files" help="(-outputDirectory) "> | |
| 40 <sanitizer> | |
| 41 <valid initial="string.printable"> | |
| 42 <remove value="'"/> | |
| 43 <remove value="""/> | |
| 44 </valid> | |
| 45 </sanitizer> | |
| 46 </param> | |
| 47 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
| 48 </expand> | |
| 49 </inputs> | |
| 50 <outputs> | |
| 51 <data name="param_stdout" format="text" label="Output from stdout"/> | |
| 52 </outputs> | |
| 53 <help>Splits SWATH files into n files, each containing one window. | |
| 54 | |
| 55 | |
| 56 For more information, visit </help> | |
| 57 </tool> |