Mercurial > repos > galaxyp > proteomics_moff
changeset 5:a96af68dafb2 draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/moFF commit 0bc6529504998425278b15f5b50f94478faede52"
| author | galaxyp |
|---|---|
| date | Wed, 06 May 2020 14:50:08 -0400 |
| parents | 7af419c90f5f |
| children | |
| files | moff.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/moff.xml Thu Mar 28 05:25:24 2019 -0400 +++ b/moff.xml Wed May 06 14:50:08 2020 -0400 @@ -1,7 +1,7 @@ <tool id="proteomics_moff" name="moFF" version="@VERSION@.0"> <description>extracts MS1 intensities from spectrum files</description> <macros> - <token name="@VERSION@">2.0.2</token> + <token name="@VERSION@">2.0.3</token> <!-- xml macros, used for shared Galaxy parameter inputs --> <xml name="ident_input_macro" token_allow_multiple="true" token_input_type="data"> <!-- this is exactly the same across all three, except for allowing multiple in MBR and all but not in moff --> @@ -169,7 +169,7 @@ #if ($task.match_filter.ptm_file): --ptm_file '$task.match_filter.ptm_file' #else: - --ptm_file '$__tool_directory__/tool-data/ptm_setting_ps.json' + --ptm_file '$__tool_directory__/tool-data/ptm_setting_ps.json' #end if #end if #if ($task.peptide_summary): @@ -216,7 +216,7 @@ --ptm_file '$__tool_directory__/tool-data/ptm_setting_ps.json' #end if #end if - + #if $task.peptide_summary: && mv ./out/peptide_summary_intensity_moFF_run.tab '$output_peptide_summary' #end if @@ -255,7 +255,7 @@ help="Specify rt window for the peak in minutes." /> <param argument="--rt_peak_win_match" type="float" value="1.2" label="retention time window for the matched peak" help="Specify the retention time window for the matched peak in minutes." /> - <expand macro="filt_matched_peptide"/> + <expand macro="filt_matched_peptide"/> <param argument="--peptide_summary" type="boolean" value="true" label="Output the peptide summary?"/> </when> <when value="mbr">