Mercurial > repos > ganjoo > webservice_toolsuite

comparison WebServiceToolWorkflow/WebServiceTool1.xml~ @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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-1:000000000000 0:d5cd409b8a18
1 <tool id="WebServiceTool_input_url" name="Step 1:Enter information about tool">
2 <description> This tool takes the URL of an external Web service. The URL should point to the description document of a Web service. Currently support for only REST Web services is provided. Therefore, this description document can be a WADL or WSDL 2.0 or SAWADL document only.</description>
3 <command interpreter="python">
4 WebServiceTool_input_url.py
5 $url
6 $output
7 </command>
8 <inputs>
9 <param format="text" size = "60" name = "url" type="text" label="Enter the tool description document location" help="see tip below"/>
10 </inputs>
11 <outputs>
12 <data format="tabular" name="output" />
13 </outputs>
14
15 <tests>
16 <test>
17 <param name="url" value="127.0.0.1:5001/hello/form"/>
18 <output name="output" file="outtest"/>
19 </test>
20 </tests>
21
22 <help>
23
24 .. class:: infomark
25
26 **TIP:** Enter the url (of the REST Web service) description document of type WADL, WSDL 2.0, or SAWADL in the above box.
27
28
29 All the Web services come with a description document like WADL or WSDL document. Galaxy can read this information
30 to create the tool.
31
32 For further assistance find samples of WADL, WSDL 2.0 and SAWADL below.
33
34 WADL : DDBJ sample services:
35
36 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJBlast.wadl
37
38
39 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJGetEntry.wadl
40
41
42 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJNCBIGenomeAnnotationGetGeneList.wadl
43
44
45 http://cs.uga.edu/__tilda__ganjoo/galaxy/Ensembl.wadl
46
47
48 More detailed information about all REST services at DDBJ can be found at http://www.xml.nig.ac.jp/index.html
49
50
51 EuPathDB sample services:
52
53 http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.wadl
54
55
56 http://eupathdb.org/eupathdb/webservices/GeneQuestions/GenesByTextSearch.wadl
57
58
59 More detailed information about all REST services at EuPathDB can be found at http://eupathdb.org/eupathdb/serviceList.jsp
60
61
62 SAWADL :
63
64 http://cs.uga.edu/__tilda__ganjoo/galaxy/GenesByTextSearch.sawadl
65
66
67 WSDL 2.0 :
68
69 http://cs.uga.edu/__tilda__ganjoo/galaxy/booklist.wsdl
70
71 *NOTE: Step 1, Step 2 and Step 3 merely add this tool to Galaxy. To use the tool, after completing Step 3, go to the Tools section on left
72 and find the tool under Web Service Tools and Web Service Workflow Tools.*
73
74 </help>
75
76 </tool>
77