Mercurial > repos > ganjoo > webservice_toolsuite

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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d5cd409b8a18 Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
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1 <tool id="WebServiceTool_input_url" name="Step 1:Enter information about tool">
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2 <description> This tool takes the URL of an external Web service. The URL should point to the description document of a Web service. Currently support for only REST Web services is provided. Therefore, this description document can be a WADL or WSDL 2.0 or SAWADL document only.</description>
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3 <command interpreter="python">
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4 WebServiceTool_input_url.py
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5 $url
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6 $output
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7 </command>
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8 <inputs>
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9 <param format="text" size = "60" name = "url" type="text" label="Enter the tool description document location" help="see tip below"/>
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10 </inputs>
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11 <outputs>
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12 <data format="tabular" name="output" />
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13 </outputs>
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14
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15 <tests>
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16 <test>
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17 <param name="url" value="127.0.0.1:5001/hello/form"/>
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18 <output name="output" file="outtest"/>
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19 </test>
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20 </tests>
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21
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22 <help>
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23
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24 .. class:: infomark
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25
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26 **TIP:** Enter the url (of the REST Web service) description document of type WADL, WSDL 2.0, or SAWADL in the above box.
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29 All the Web services come with a description document like WADL or WSDL document. Galaxy can read this information
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30 to create the tool.
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31
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32 For further assistance find samples of WADL, WSDL 2.0 and SAWADL below.
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33
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34 WADL : DDBJ sample services:
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36 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJBlast.wadl
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39 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJGetEntry.wadl
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42 http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJNCBIGenomeAnnotationGetGeneList.wadl
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45 http://cs.uga.edu/__tilda__ganjoo/galaxy/Ensembl.wadl
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48 More detailed information about all REST services at DDBJ can be found at http://www.xml.nig.ac.jp/index.html
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51 EuPathDB sample services:
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53 http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.wadl
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56 http://eupathdb.org/eupathdb/webservices/GeneQuestions/GenesByTextSearch.wadl
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59 More detailed information about all REST services at EuPathDB can be found at http://eupathdb.org/eupathdb/serviceList.jsp
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62 SAWADL :
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64 http://cs.uga.edu/__tilda__ganjoo/galaxy/GenesByTextSearch.sawadl
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67 WSDL 2.0 :
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68
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69 http://cs.uga.edu/__tilda__ganjoo/galaxy/booklist.wsdl
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71 *NOTE: Step 1, Step 2 and Step 3 merely add this tool to Galaxy. To use the tool, after completing Step 3, go to the Tools section on left
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72 and find the tool under Web Service Tools and Web Service Workflow Tools.*
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73
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74 </help>
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75
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76 </tool>
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77