Mercurial > repos > ganjoo > webservice_toolsuite
diff WebServiceToolWorkflow/WebServiceTool1.xml~ @ 0:d5cd409b8a18 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author | ganjoo |
---|---|
date | Tue, 07 Jun 2011 18:00:50 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/WebServiceToolWorkflow/WebServiceTool1.xml~ Tue Jun 07 18:00:50 2011 -0400 @@ -0,0 +1,77 @@ +<tool id="WebServiceTool_input_url" name="Step 1:Enter information about tool"> + <description> This tool takes the URL of an external Web service. The URL should point to the description document of a Web service. Currently support for only REST Web services is provided. Therefore, this description document can be a WADL or WSDL 2.0 or SAWADL document only.</description> + <command interpreter="python"> + WebServiceTool_input_url.py + $url + $output + </command> + <inputs> + <param format="text" size = "60" name = "url" type="text" label="Enter the tool description document location" help="see tip below"/> + </inputs> + <outputs> + <data format="tabular" name="output" /> + </outputs> + + <tests> + <test> + <param name="url" value="127.0.0.1:5001/hello/form"/> + <output name="output" file="outtest"/> + </test> + </tests> + + <help> + +.. class:: infomark + +**TIP:** Enter the url (of the REST Web service) description document of type WADL, WSDL 2.0, or SAWADL in the above box. + + +All the Web services come with a description document like WADL or WSDL document. Galaxy can read this information +to create the tool. + +For further assistance find samples of WADL, WSDL 2.0 and SAWADL below. + +WADL : DDBJ sample services: + + http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJBlast.wadl + + + http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJGetEntry.wadl + + + http://cs.uga.edu/__tilda__ganjoo/galaxy/DDBJNCBIGenomeAnnotationGetGeneList.wadl + + + http://cs.uga.edu/__tilda__ganjoo/galaxy/Ensembl.wadl + + + More detailed information about all REST services at DDBJ can be found at http://www.xml.nig.ac.jp/index.html + + + EuPathDB sample services: + + http://eupathdb.org/webservices/GeneQuestions/GenesByMolecularWeight.wadl + + + http://eupathdb.org/eupathdb/webservices/GeneQuestions/GenesByTextSearch.wadl + + + More detailed information about all REST services at EuPathDB can be found at http://eupathdb.org/eupathdb/serviceList.jsp + + +SAWADL : + + http://cs.uga.edu/__tilda__ganjoo/galaxy/GenesByTextSearch.sawadl + + +WSDL 2.0 : + + http://cs.uga.edu/__tilda__ganjoo/galaxy/booklist.wsdl + +*NOTE: Step 1, Step 2 and Step 3 merely add this tool to Galaxy. To use the tool, after completing Step 3, go to the Tools section on left +and find the tool under Web Service Tools and Web Service Workflow Tools.* + + </help> + +</tool> +