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annotate SplitOnRg.xml @ 2:2572b6f85654 draft default tip

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added samtools requirement to splitonrg
author geert-vandeweyer
date Mon, 12 May 2014 02:06:26 -0400
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1 <tool id="bamtools_SplitOnRG" name="Split BAM on ReadGroups" force_history_refresh="True">
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2 <description/>
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3 <requirements>
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4 <requirement type="package" version="2.3.0">bamtools</requirement>
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5 <requirement type="package" version="0.1.18">samtools</requirement>
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7 </requirements>
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8 <command interpreter="perl">
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9 SplitOnRg.pl -i '$input1' -o $output1 -O $output1.id -k $dbkey -p $__new_file_path__
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10 </command>
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11 <inputs>
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12 <param format="bam" name="input1" type="data" label="BAM file"/>
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13 </inputs>
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14 <outputs>
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15 <data format="txt" name="output1" metadata_source="input1" />
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16 </outputs>
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17 <help>
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18 **What it does** This tools splits a bam file by RG-ids. ------- *bamtools split* is part of the `BAMTools package` by Derek Barnett. : https://github.com/pezmaster31/bamtools
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19 </help>
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20 </tool>