Mercurial > repos > genouest > gcms2isocor
annotate gcms2isocor.xml @ 1:6042d557e451 draft
"planemo upload commit 8066fffcf1ff0c43dedf6de0d6baaa8ee85ee201"
author | genouest |
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date | Tue, 05 Oct 2021 12:44:23 +0000 |
parents | 240ec5e4b0be |
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1 <tool id="gcms2isocor" name="Conversion GCMS PostRun Analysis to IsoCor" version="0.1.0" profile="20.09"> |
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2 <requirements> |
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3 <requirement type="package" version="8.0.121">openjdk</requirement> |
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4 </requirements> |
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5 <command detect_errors="exit_code"><![CDATA[ |
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6 java -jar '$__tool_directory__/P2M2WorkflowsTools-assembly-0.1.jar' |
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7 #for $input in $input_gcms_files |
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8 #if $input |
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9 $input |
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10 #end if |
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11 #end for |
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12 --out '$output_isocor' |
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13 ]]></command> |
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14 <inputs> |
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15 <param type="data" name="input_gcms_files" multiple="true" format="txt" /> |
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16 </inputs> |
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17 <outputs> |
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18 <data name="output_isocor" format="tsv" /> |
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19 </outputs> |
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20 <tests> |
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21 <test> |
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22 <param name="input_gcms_files" value="13CPROT1.txt,13CPROT2.txt"/> |
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23 <output name="output_isocor" file="input_isocor.tsv"/> |
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24 </test> |
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25 </tests> |
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26 <help><![CDATA[ |
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27 Conversion from GCMS PostRun Analysis to Isocore. |
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28 Processes GCMS files with the following categories: Header, MS Quantitative Results. |
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29 ]]></help> |
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30 </tool> |