Mercurial > repos > gga > chado_export_export_fasta

annotate export_export_fasta.xml @ 12:20e02d166534 draft

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
author gga
date Wed, 21 Aug 2019 05:07:24 -0400
parents 68353384ec7f
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5f69e36413a4 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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1 <?xml version="1.0"?>
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20e02d166534 "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
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2 <tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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5f69e36413a4 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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8 <code file="chado.py"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 @START_PSQL@ &&
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5f69e36413a4 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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12 chakin export export_fasta
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13 '$organism'
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15 > '$results'
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17 @STOP_PSQL@
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18 ]]></command>
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19 <inputs>
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20 <expand macro="psql_target"/>
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21 <!-- arguments -->
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22 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
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23 <expand macro="wait_for"/>
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25 </inputs>
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26 <outputs>
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27 <data format="fasta" name="results"/>
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28 </outputs>
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29 <help>
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30 Export reference sequences as fasta.
5f69e36413a4 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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5f69e36413a4 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
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32 @HELP@
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33 </help>
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34 </tool>