annotate expression_delete_all_biomaterials.xml @ 6:596d9834ac30 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
author gga
date Thu, 11 Jul 2019 08:36:45 -0400
parents 3a3791f72693
children 24b13e012f3e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
1 <?xml version="1.0"?>
6
596d9834ac30 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
gga
parents: 5
diff changeset
2 <tool id="expression_delete_all_biomaterials" name="Chado biomaterials delete all" version="@WRAPPER_VERSION@.1">
2
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
3 <description></description>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
4 <macros>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
5 <import>macros.xml</import>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
6 </macros>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
7 <expand macro="requirements"/>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
8 <command detect_errors="aggressive"><![CDATA[
5
3a3791f72693 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
gga
parents: 4
diff changeset
9 @START_PSQL@ &&
0
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
10
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
11 chakin expression delete_all_biomaterials
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
12
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
13 $confirm
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
14
4
c3a38dd6e7aa planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 35c5eff77b573a66f3611b4906417df9a440c857
gga
parents: 2
diff changeset
15 > '$results'
5
3a3791f72693 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
gga
parents: 4
diff changeset
16
6
596d9834ac30 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
gga
parents: 5
diff changeset
17 @ZIP_PSQL@
0
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
18 ]]></command>
2
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
19 <inputs>
5
3a3791f72693 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
gga
parents: 4
diff changeset
20 <expand macro="psql_target"/>
2
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
21 <!-- options -->
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
22 <param name="confirm" label="Confirm" argument="confirm" type="boolean" truevalue="--confirm" falsevalue="" help="Confirm that you really do want to delete ALL of the biomaterials." />
0
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
23
2
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
24 <expand macro="wait_for"/>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
25 </inputs>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
26 <outputs>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
27 <data format="txt" name="results"/>
5
3a3791f72693 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
gga
parents: 4
diff changeset
28 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
3a3791f72693 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
gga
parents: 4
diff changeset
29 <filter>psql_target['method'] == "pgtools"</filter>
3a3791f72693 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
gga
parents: 4
diff changeset
30 </data>
2
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
31 </outputs>
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
32 <help>
0
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
33 Delete all biomaterials
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
34
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
35 @HELP@
2
d971894a31a3 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
36 </help>
0
db7db54dd2d8 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
37 </tool>