Mercurial > repos > gga > chado_phylogeny_gene_order

annotate phylogeny_gene_order.xml @ 8:38998568205a draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 10:58:35 -0500
parents 9bd557c70bcb
children cba2274d1463
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1 <?xml version="1.0"?>
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2 <tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0">
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3 <description>for phylogeny module</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 @AUTH@
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11 chakin phylogeny gene_order
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12
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13 $nuke
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15 > $results
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16 ]]></command>
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17 <inputs>
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18 <!-- options -->
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19 <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" />
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20 <expand macro="wait_for"/>
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22 </inputs>
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23 <outputs>
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24 <data format="txt" name="results"/>
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25 </outputs>
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26 <help>
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27 Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/).
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29 @HELP@
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30 </help>
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31 </tool>