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0
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1 <macros>
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2 <token name="@TOOL_VERSION@">5.2.0</token>
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3 <token name="@VERSION_SUFFIX@">0</token>
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4 <token name="@PROFILE@">21.01</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <requirement type="package" version="@TOOL_VERSION@">quast</requirement>
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8 <requirement type="package" version="0.7.17">bwa</requirement>
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9 <requirement type="package" version="2.30.0">bedtools</requirement>
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10 </requirements>
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11 </xml>
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12 <xml name="bio_tools">
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13 <xrefs>
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14 <xref type="bio.tools">quast</xref>
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15 </xrefs>
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16 </xml>
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17 <xml name="gene_thresholds">
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18 <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/>
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19 </xml>
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20 <xml name="citations">
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21 <citations>
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22 <citation type="doi">10.1093/bioinformatics/bty266</citation>
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23 <citation type="doi">10.1093/bioinformatics/btw379</citation>
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24 <citation type="doi">10.1093/bioinformatics/btv697</citation>
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25 <citation type="doi">10.1093/bioinformatics/btt086</citation>
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26 </citations>
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27 </xml>
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28 <xml name="min_identity_macros" token_value="">
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29 <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments
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30 with IDY% less than 80.0% will be filtered regardless of this threshold. "/>
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31 </xml>
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32 </macros>
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