Mercurial > repos > greg > quast
diff macros.xml @ 0:5367786dc871 draft default tip
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author | greg |
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date | Tue, 14 Mar 2023 15:21:14 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Mar 14 15:21:14 2023 +0000 @@ -0,0 +1,32 @@ +<macros> + <token name="@TOOL_VERSION@">5.2.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.01</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">quast</requirement> + <requirement type="package" version="0.7.17">bwa</requirement> + <requirement type="package" version="2.30.0">bedtools</requirement> + </requirements> + </xml> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">quast</xref> + </xrefs> + </xml> + <xml name="gene_thresholds"> + <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/bty266</citation> + <citation type="doi">10.1093/bioinformatics/btw379</citation> + <citation type="doi">10.1093/bioinformatics/btv697</citation> + <citation type="doi">10.1093/bioinformatics/btt086</citation> + </citations> + </xml> + <xml name="min_identity_macros" token_value=""> + <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments + with IDY% less than 80.0% will be filtered regardless of this threshold. "/> + </xml> +</macros>