Mercurial > repos > greg > quast
comparison macros.xml @ 0:5367786dc871 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Tue, 14 Mar 2023 15:21:14 +0000 |
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| -1:000000000000 | 0:5367786dc871 |
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| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">5.2.0</token> | |
| 3 <token name="@VERSION_SUFFIX@">0</token> | |
| 4 <token name="@PROFILE@">21.01</token> | |
| 5 <xml name="requirements"> | |
| 6 <requirements> | |
| 7 <requirement type="package" version="@TOOL_VERSION@">quast</requirement> | |
| 8 <requirement type="package" version="0.7.17">bwa</requirement> | |
| 9 <requirement type="package" version="2.30.0">bedtools</requirement> | |
| 10 </requirements> | |
| 11 </xml> | |
| 12 <xml name="bio_tools"> | |
| 13 <xrefs> | |
| 14 <xref type="bio.tools">quast</xref> | |
| 15 </xrefs> | |
| 16 </xml> | |
| 17 <xml name="gene_thresholds"> | |
| 18 <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/> | |
| 19 </xml> | |
| 20 <xml name="citations"> | |
| 21 <citations> | |
| 22 <citation type="doi">10.1093/bioinformatics/bty266</citation> | |
| 23 <citation type="doi">10.1093/bioinformatics/btw379</citation> | |
| 24 <citation type="doi">10.1093/bioinformatics/btv697</citation> | |
| 25 <citation type="doi">10.1093/bioinformatics/btt086</citation> | |
| 26 </citations> | |
| 27 </xml> | |
| 28 <xml name="min_identity_macros" token_value=""> | |
| 29 <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments | |
| 30 with IDY% less than 80.0% will be filtered regardless of this threshold. "/> | |
| 31 </xml> | |
| 32 </macros> |