Mercurial > repos > guerler > ffindex_dbkit_extract
changeset 3:4def47766a3c draft default tip
"planemo upload commit fe7295ad48151648562b06d5b075a68d77747326"
| author | guerler |
|---|---|
| date | Thu, 08 Apr 2021 18:20:04 +0000 |
| parents | 953f0fd655c0 |
| children | |
| files | dbkit_extract.xml test-data/create/first_gz.ffdata test-data/create/first_gz.ffindex test-data/create/pdb_gz.tabular test-data/extract/third.ffdata test-data/extract/third.ffindex test-data/ffindex_indices.loc test-data/merge/result.log |
| diffstat | 8 files changed, 31 insertions(+), 2 deletions(-) [+] |
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--- a/dbkit_extract.xml Thu Apr 01 19:36:20 2021 +0000 +++ b/dbkit_extract.xml Thu Apr 08 18:20:04 2021 +0000 @@ -19,8 +19,8 @@ </inputs> <outputs> <data format="ffindex" name="outindex" label="DBKit Extracted Index" /> - <data format="ffdata" name="outdata" label="DBKit Extraced Database" /> - <data format="txt" name="logfile" label="DBKit Extraced Log"> + <data format="ffdata" name="outdata" label="DBKit Extracted Database" /> + <data format="txt" name="logfile" label="DBKit Extracted Log"> <filter>logfile</filter> </data> </outputs> @@ -44,6 +44,15 @@ <output name="outindex" file="merge/second.ffindex" /> <output name="outdata" file="merge/second.ffdata" /> </test> + <test> + <param name="list" value="create/pdb_gz.tabular" /> + <conditional name="db_source"> + <param name="db_source_selector" value="indexed" /> + <param name="ffindex" value="first_gz" /> + </conditional> + <output name="outindex" file="extract/third.ffindex" /> + <output name="outdata" file="extract/third.ffdata" /> + </test> </tests> <help><![CDATA[
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/create/first_gz.ffindex Thu Apr 08 18:20:04 2021 +0000 @@ -0,0 +1,11 @@ +pdb6vyb.ent.gz 0 464845 +pdb6vyo.ent.gz 464845 189205 +pdb6w37.ent.gz 654050 15368 +pdb6w4h.ent.gz 669418 168909 +pdb6w9c.ent.gz 838327 318155 +pdb6w9q.ent.gz 1156482 46740 +pdb6wey.ent.gz 1203222 107427 +pdb6wji.ent.gz 1310649 215621 +pdb6wlc.ent.gz 1526270 265637 +pdb7bqy.ent.gz 1791907 115398 +pdb7bv2.ent.gz 1907305 167678
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/create/pdb_gz.tabular Thu Apr 08 18:20:04 2021 +0000 @@ -0,0 +1,2 @@ +pdb6w37.ent.gz +pdb6w4h.ent.gz \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract/third.ffindex Thu Apr 08 18:20:04 2021 +0000 @@ -0,0 +1,2 @@ +pdb6w37.ent.gz 0 15368 +pdb6w4h.ent.gz 15368 168909
--- a/test-data/ffindex_indices.loc Thu Apr 01 19:36:20 2021 +0000 +++ b/test-data/ffindex_indices.loc Thu Apr 08 18:20:04 2021 +0000 @@ -2,4 +2,5 @@ #unique_id display name path type second PDB 2021-03-17-second ${__HERE__}/merge/second pdb first PDB 2021-03-17-first ${__HERE__}/create/first pdb +first_gz PDB_GZ 2021-03-17-first ${__HERE__}/create/first_gz pdb merge PDB 2021-03-17-merge ${__HERE__}/merge/result pdb \ No newline at end of file