Mercurial > repos > guerler > springsuite
annotate planemo/lib/python3.7/site-packages/galaxy/tool_util/fetcher.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:32:28 -0400 |
parents | |
children |
rev | line source |
---|---|
1
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
1 from galaxy.util import plugin_config |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
2 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
3 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
4 class ToolLocationFetcher(object): |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
5 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
6 def __init__(self): |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
7 self.resolver_classes = self.__resolvers_dict() |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
8 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
9 def __resolvers_dict(self): |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
10 import galaxy.tool_util.locations |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
11 return plugin_config.plugins_dict(galaxy.tool_util.locations, 'scheme') |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
12 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
13 def to_tool_path(self, path_or_uri_like, **kwds): |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
14 if "://" not in path_or_uri_like: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
15 path = path_or_uri_like |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
16 else: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
17 uri_like = path_or_uri_like |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
18 if ":" not in path_or_uri_like: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
19 raise Exception("Invalid URI passed to get_tool_source") |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
20 scheme, rest = uri_like.split(":", 2) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
21 if scheme not in self.resolver_classes: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
22 raise Exception("Unknown tool scheme [%s] for URI [%s]" % (scheme, uri_like)) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
23 path = self.resolver_classes[scheme]().get_tool_source_path(uri_like) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
24 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
25 return path |